NDB ID: UD0020


Title:CRYSTAL STRUCTURE OF D(GCGAAAGCT) CONTAINING PARALLEL-STRANDED DUPLEX WITH HOMO BASE PAIRS AND ANTI-PARALLEL DUPLEX WITH WATSON-CRICK BASE PAIRS
Molecular Description:5'-D(GpCpGpApApApGpCpT)-3'
Nucleic Acid Sequence:
ChainA:(DG) (DC) (DG) (DA) (DA) (DA) (DG) (DC) (DT)
Primary Citation:Sunami, T., Kondo, J., Kobuna, T., Hirao, I., Watanabe, K., Miura, K., Takenaka, A.
Crystal Structure of d(GCGAAAGCT) Containing a Parallel-stranded Duplex with Homo Base Pairs and an Anti-Parallel Duplex with Watson-Crick Base pairs
Nucleic Acids Res. , 30, pp. 5253 - 5260, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   2
Cell Constants:
a = 53.4b = 53.4c = 54.0(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.5 for 1333 reflections in the resolution range 9. to 2.5 Ångstroms with Fobs > 3. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1IXJ

PubMed: 12466550




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