NDB ID: UD0028


Title:EFFECT OF SEQUENCE ON THE CONFORMATIONAL GEOMETRY OF DNA HOLLIDAY JUNCTIONS
Molecular Description:5'-D(CpCpGpGpCpGpCpCpGpG)-3'
Structural Features:B DOUBLE HELIX, Flipped-out bases
Nucleic Acid Sequence:
ChainsA, B: (DC) (DC) (DG) (DG) (DC) (DG) (DC) (DC) (DG) (DG)
Primary Citation:Hays, F.A., Vargason, J.M., Ho, P.S.
Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry , 42, pp. 9586 - 9597, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 66.513b = 24.179c = 37.004(Ångstroms)
= 90.0 = 110.010 = 90.0(degrees)
Crystallization Conditions:
Drop:sodium cacodylate, CaCl2, SPERMINE TETRAHYDROCHLORIDE, H2O
Reservoir:sodium cacodylate, CaCl2, SPERMINE TETRAHYDROCHLORIDE, H2O
Refinement:The structure was refined using the CNS 1.0 program. The R value is 22.9 for 4436 reflections in the resolution range 22.50 to 1.70 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Unit 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1P4Y

PubMed: 12911300




ndbadmin@ndbserver.rutgers.edu
©1995-2007 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey