NDB ID: UD0029


Title:EFFECT OF SEQUENCE ON THE CONFORMATIONAL GEOMETRY OF DNA HOLLIDAY JUNCTIONS
Molecular Description:5'-D(CpCpApGpTpApCpTpGpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DC) (DA) (DG) (DT) (DA) (DC) (DT) (DG) (DG)
Primary Citation:Hays, F.A., Vargason, J.M., Ho, P.S.
Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry , 42, pp. 9586 - 9597, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 33.380b = 33.380c = 87.670(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 23.6 for 2143 reflections in the resolution range 17.47 to 2.00 Ångstroms with Fobs > 0.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1P4Z

PubMed: 12911300




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