NDB ID: UD0031


Title:CRYSTAL STRUCTURE OF A CONTINUOUS THREE-DIMENSIONAL DNA LATTICE FROM D(GGACAGATGGGAG)
Molecular Description:5'-D(GpGpAp(CB2)pApGpAp(BRU)pGpGpGpAp
G)-3'
Structural Features:DOUBLE HELIX, PARALLEL-STRANDED
Nucleic Acid Sequence:
ChainX: (DG) (DG) (DA) (CB2) (DA) (DG) (DA) (BRU) (DG) (DG) (DG) (DA) (DG)
Primary Citation:Paukstelis, P.J., Nowakowski, J., Birktoft, J.J., Seeman, N.C.
Crystal structure of a continuous three-dimensional DNA lattice.
Chem.Biol. , 11, pp. 1119 - 1126, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 64
Cell Constants:
a = 40.630b = 40.630c = 55.270(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:magnesium formate, mpd, LiCl
Reservoir:mpd, LiCl
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 20.332 for 2870 reflections in the resolution range 35.14 to 2.10 Ångstroms with Fobs > 2 sigma(Fobs).

Biological Unit 1
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Asymmetric Unit
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1P1Y

PubMed: 15324813




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