NDB ID: UD0032


Title:CRYSTAL STRUCTURE OF D(GC38GAAAGCT)
Molecular Description:5'-D(Gp(C38)pGpApApApGpCpT)-3'
Structural Features:DOUBLE HELIX, BASE INTERCALATED
Nucleic Acid Sequence:
ChainA:(DG) (C38) (DG) (DA) (DA) (DA) (DG) (DC) (DT)
Primary Citation:Sunami, T., Kondo, J., Hirao, I., Watanabe, K., Miura, K.I., Takenaka, A.
Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Acta Crystallogr.,Sect.D , 60, pp. 90 - 96, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 63   2
Cell Constants:
a = 36.736b = 36.736c = 64.754(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 20.9 for 5111 reflections in the resolution range 10. to 1.4 Ångstroms with Fobs > 3. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1UE2

PubMed: 14684897




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