NDB ID: UD0033


Title:CRYSTAL STRUCTURE OF D(GCGAAAGC) CONTAINING HEXAAMMINECOBALT
Molecular Description:5'-D(GpCpGpApApApGpC)-3'
Structural Features:DOUBLE HELIX, BASE INTERCALATED
Nucleic Acid Sequence:
ChainA: (DG) (DC) (DG) (DA) (DA) (DA) (DG) (DC)
Primary Citation:Sunami, T., Kondo, J., Hirao, I., Watanabe, K., Miura, K.I., Takenaka, A.
Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Acta Crystallogr.,Sect.D , 60, pp. 90 - 96, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 63   2
Cell Constants:
a = 37.373b = 37.373c = 64.587(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:magnesium chloride, spermine 4HCl, hexaamminecobalt(III) chloride, 2-methyl-2,4-pentanediol, sodium cacodylate
Reservoir:magnesium chloride, spermine 4HCl, hexaamminecobalt(III) chloride
Refinement:The structure was refined using the CNS program. The R value is 22.72 for 1538 reflections in the resolution range 10 to 2.15 Ångstroms with Fobs > 3 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1UE3

PubMed: 14684897




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