NDB ID: UD0034


Title:CRYSTAL STRUCTURE OF D(GCGAAAGC)
Molecular Description:5'-D(GpCpGpApApApGpC)-3'
Structural Features:DOUBLE HELIX, BULGES
Nucleic Acid Sequence:
ChainA: (DG) (DC) (DG) (DA) (DA) (DA) (DG) (DC)
Primary Citation:Sunami, T., Kondo, J., Hirao, I., Watanabe, K., Miura, K., Takenaka, A.
Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D , 60, pp. 422 - 431, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 36.907b = 36.907c = 64.312(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:sodium chloride, magnesium chloride, spermine 4HCl, 2-methyl-2,4-pentanediol, sodium cacodylate
Reservoir:sodium chloride, magnesium chloride, spermine 4HCl
Refinement:The structure was refined using the CNS program. The R value is 20.89 for 2792 reflections in the resolution range 15 to 1.65 Ångstroms with Fobs > 3 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1UE4

PubMed: 14993665




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