NDB ID: UD0035


Title:CRYSTAL STRUCTURE OF AN ALTERNATING A-T OLIGONUCLEOTIDE FRAGMENT WITH HOOGSTEEN BASE PAIRING
Molecular Description:5'-D(ApTpAp(BRU)pApT)-3'
Structural Features:RH DOUBLE HELIX, HOOGSTEEN BASE PAIRING, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsA,B,C,D:(DA) (DT) (DA) (BRU) (DA) (DT)
Primary Citation:Abrescia, N.G.A., Thompson, A., Huynh-Dinh, T., Subirana, J.A.
Crystal Structure of an Antiparallel DNA Fragment with Hoogsteen Base Pairing
Proc.Natl.Acad.Sci.USA , 99, pp. 2806, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 23.960b = 48.950c = 32.240(Ångstroms)
= 90.00 = 93.27 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 22.0 for 2547 reflections in the resolution range 15.00 to 2.5 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1GQU

PubMed: 11880632




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