NDB ID: UD0037


Title:CRYSTAL STRUCTURE OF D(GCGATAGC): THE BASE-INTERCALATED DUPLEX
Molecular Description:5'-D(Gp(CBR)pGpApTpApGpC)-3'
Structural Features:RH DOUBLE HELIX, BASE INTERCALATED
Nucleic Acid Sequence:
ChainA:(DG) (CBR) (DG) (DA) (DT) (DA) (DG) (DC)
Primary Citation:Kondo, J., Umeda, S.I., Fujita, K., Sunami, T., Takenaka, A.
X-ray analyses of d(GCGAXAGC) containing G and T at X: the base-intercalated duplex is still stable even in point mutants at the fifth residue.
J.Synchrotron Radiat. , 11, pp. 117 - 120, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 63   2
Cell Constants:
a = 37.000b = 37.000c = 65.300(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 22.4 for 2707 reflections in the resolution range 22.87 to 1.7 Ångstroms with Fobs > 3.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1UHY

PubMed: 14646150




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