NDB ID: UD0044


Title:CRYSTAL STRUCTURES OF D(GM5CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS OF METHYLATION ON ALTERNATING DNA OCTAMERS
Molecular Description:5'-D(Gp(5CM)pGp(5CM)pGpCpGpC)-3'
Structural Features:RH DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DG) (5CM) (DG) (5CM) (DG) (DC) (DG) (DC)
Primary Citation:Shi, K., Pan, B., Tippin, D., Sundaralingam, M.
Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D , 60, pp. 61 - 65, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 43   21   2
Cell Constants:
a = 42.97b = 42.97c = 24.93(Ångstroms)
= 90 = 90 = 90(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:cacodylate, magnesium chloride, spermine tetrachloride, H2O
Reservoir:cacodylate, magnesium chloride, spermine tetrachloride, H2O
Refinement:The structure was refined using the CNS program. The R value is 17 for 2311 reflections in the resolution range 10 to 1.7 Ångstroms with Fobs > 0 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1R3Z

PubMed: 14684893




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