NDB ID: UD0049


Title:X-RAY STUDY OF THE DNA OLIGOMER D(ATATAT) IN P65 SPACE GROUP
Molecular Description:5'-D(ApTpApTpApT)-3'
Structural Features:DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA, B, C, D: (DA) (DT) (DA) (DT) (DA) (DT)
Primary Citation:Abrescia, N.G., Gonzalez, C., Gouyette, C., Subirana, J.A.
X-ray and NMR studies of the DNA oligomer d(ATATAT): Hoogsteen base pairing in duplex DNA.
Biochemistry , 43, pp. 4092 - 4100, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 65
Cell Constants:
a = 32.313b = 32.313c = 117.779(Ångstroms)
= 90 = 90 = 120(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:Spermine, NaCl, MPD, cacodylate, H2O
Reservoir:MPD, cacodylate, H2O
Refinement:The structure was refined using the CNS 1.1 program. The R value is 21.77 for 3475 reflections in the resolution range 15 to 2.17 Ångstroms with Fobs > 0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1RSB

PubMed: 15065851




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