NDB ID: UD0050


Title:CRYSTAL STRUCTURE ANALYSIS OF THE DNA QUADRUPLEX D(TGGGGT) S1
Molecular Description:5'-D(TpGpGpGpGpT)-3'
Structural Features:QUADRUPLE HELIX, PARALLEL-STRANDED TETRAPLEX
Nucleic Acid Sequence:
ChainsA, B, C, D, E, F, G, H: (DT) (DG) (DG) (DG) (DG) (DT)
Primary Citation:Caceres, C., Wright, G., Gouyette, C., Parkinson, G., Subirana, J.A.
A Thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+1/Na+1 ions
Nucleic Acids Res. , 32, pp. 1097 - 1102, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 28.259b = 35.410c = 32.057(Ångstroms)
= 83.73 = 61.78 = 76.68(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:MPD, sodium cacodylate, magnesium chloride, spermine tetrahydrochlorhide, thallium acetate, lysine-anthraquinone, H2O
Reservoir:sodium cacodylate, magnesium chloride, thallium acetate, H2O
Refinement:The structure was refined using the CNS 1.1 program. The R value is 17.3 for 4721 reflections in the resolution range 18.50 to 2.20 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit

Biological Units
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Links

The Protein Data Bank: 1S45

PubMed: 14960719




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