NDB ID: UD0052


Title:INFLUENCE OF GROOVE INTERACTIONS ON THE FORMATION OF DNA HOLLIDAY JUNCTIONS
Molecular Description:5'-D(CpCp(OIP)GpTpApCp(5CM)pGpG)-3'
Structural Features:DOUBLE HELIX, Holliday junction
Nucleic Acid Sequence:
ChainsA, B: (DC) (DC) (DI) (DG) (DT) (DA) (DC) (5CM) (DG) (DG)
Primary Citation:Hays, F.A., Jones, Z.J., Ho, P.S.
Influence of minor groove substituents on the structure of DNA holliday junctions.
Biochemistry , 43, pp. 9813 - 9822, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 64.923b = 24.869c = 37.095(Ångstroms)
= 90.00 = 109.22 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:Na Cacodylate, .5mM DNA, CaCl2, spermine
Reservoir:MPD, Na Cacodylate
Refinement:The structure was refined using the CNS 1.1 program. The R value is 23.6 for 2852 reflections in the resolution range 18.2 to 2.20 Ångstroms with I > 0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1S1L

PubMed: 15274635




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