NDB ID: UD0053


Title:CRYSTAL STRUCTURE OF A DNA DECAMER CONTAINING A THYMINE-DIMER
Molecular Description:5'-D(GpCp(BRU)pTpApApTp(BRU)pCpG)-3'
Structural Features:DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, C: (DG) (DC) (BRU) (DT) (DA) (DA) (DT) (BRU) (DC) (DG)
ChainsB, D: (DC) (DG) (DA) (DA) (DT) (DT) (DA) (DA) (DG) (DC)
Primary Citation:Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C.
Crystal Structure of a DNA Decamer Containing a Thymine-dimer
Proc.Natl.Acad.Sci.USA , 99, pp. 15965 - 15970, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 24.5b = 53.85c = 75.33(Ångstroms)
= 90 = 90 = 90(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:MgCl2, HEPES-Na, PEG 400
Reservoir:MgCl2, PEG 400
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 19.8 for 6447 reflections in the resolution range 10 to 2 Ångstroms with Fobs > 2 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Units
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1SM5

PubMed: 12456887




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