NDB ID: UD0059


Title:FOUR-STRANDED DNA HOLLIDAY JUNCTION (CCC)
Molecular Description:5'-D(CpCpGpGpGpCpCpCpGpG)-3'
Structural Features:QUADRUPLE HELIX, TETRAPLEX, OPEN HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DC) (DG) (DG) (DG) (DC) (DC) (DC) (DG) (DG)
Primary Citation:Hays, F.A., Teegarden, A., Jones, Z.J., Harms, M., Raup, D., Watson, J., Cavaliere, E., Ho, P.S.
How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa , 102, pp. 7157 - 7162, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 64.960b = 24.710c = 36.760(Ångstroms)
= 90.00 = 110.69 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:Na Cacodylate, CaCl2, Spermine, MPD, H2O, Na Cacodylate, CaCl2, Spermine, MPD, H2O
Reservoir:Na Cacodylate, CaCl2, MPD, H2O, Na Cacodylate, CaCl2, MPD, H2O
Refinement:The structure was refined using the CNS 1.1 program. The R value is 23.1 for 3477 reflections in the resolution range 16.00 to 1.95 Ångstroms with Fobs > 0.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Unit 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1ZF2

PubMed: 15870206




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