NDB ID: UDJ031


Title:CRYSTAL STRUCTURE OF A DNA DECAMER SHOWING A NOVEL PSEUDO FOUR-WAY HELIX-HELIX JUNCTION
Molecular Description:5'-D(CpGpCpApApTpTpGpCpG)-3'
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASE, BASE TRIPLET
Nucleic Acid Sequence:
ChainA: (DC) (DG) (DC) (DA) (DA) (DT) (DT) (DG) (DC) (DG)
Primary Citation:Spink, N., Nunn, C.M., Vojtechovsky, J., Berman, H.M., Neidle, S.
Crystal structure of a DNA decamer showing a novel pseudo four-way helix-helix junction.
Proc.Natl.Acad.Sci.USA , 92, pp. 10767 - 10771, 1995.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 27.010b = 39.260c = 54.060(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:WATER, MPD, MgCl2, Na Cacodylate, BERENIL
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 21.2 for 957 reflections in the resolution range 8.000 to 2.500 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 237D

PubMed: 7479880




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