NDB ID: UDJB44


Title:CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA
Molecular Description:5'-D(ApGpGp(CBR)pApTpGpCpCpT)-3'
Structural Features:A DOUBLE HELIX, FLIPPED-OUT BASE, BASE TRIPLET
Nucleic Acid Sequence:
ChainA: (DA) (DG) (DG) (CBR) (DA) (DT) (DG) (DC) (DC) (DT)
Primary Citation:Nunn, C.M.
Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA
J.Biomol.Struct.Dyn. , 14, pp. 49 - 56, 1996.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 33.200b = 33.200c = 77.100(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:WATER, MPD, Na Cacodylate, NH4OH, [CO(NH3)6]CL3, WATER
Reservoir:MPD, WATER
Refinement:The structure was refined using the X-PLOR program. The R value is 19.6 for 1748 reflections in the resolution range 8.000 to 2.000 Ångstroms with Fobs > 2.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 238D

PubMed: 8877561




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