NDB ID: UDM010


Title:THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS
Molecular Description:5'-D(CpGpCpApGpApApTpTpCpGpCpG)-3'
Structural Features:B DOUBLE HELIX, BULGE, FLIPPED-OUT BASE
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DA) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Joshua-Tor, L., Frolow, F., Appella, E., Hope, H., Rabinovich, D., Sussman, J.L.
Three-dimensional structures of bulge-containing DNA fragments.
J.Mol.Biol. , 225, pp. 397 - 431, 1992.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 78.480b = 42.840c = 25.160(Ångstroms)
= 90.00 = 99.36 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:WATER, MPD, SPERMINE, MgCl2, Na Cacodylate
Reservoir:WATER, MPD, NaCl
Refinement:The structure was refined using the NUCLSQ, X-PLOR program. The R value is 18.6 for 1640 reflections in the resolution range 10.000 to 2.600 Ångstroms with Fobs > 3.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1D31

PubMed: 1593627




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