NDB ID: UDP011


Title:STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS
Molecular Description:5'-D(CpGpCpGpCpGpTpTpTpTpCpGpCpGpCpG)-3'
Structural Features:Z SINGLE STRAND, Z-DNA STEM, HAIRPIN LOOP
Nucleic Acid Sequence:
ChainA: (DC) (DG) (DC) (DG) (DC) (DG) (DT) (DT) (DT) (DT) (DC) (DG) (DC) (DG) (DC) (DG)
Primary Citation:Chattopadhyaya, R., Grzeskowiak, K., Dickerson, R.E.
Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.
J.Mol.Biol. , 211, pp. 189 - 210, 1990.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 57.180b = 21.630c = 36.400(Ångstroms)
= 90.00 = 95.22 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, ISOPROPANOL, Na Cacodylate, Spermine HCl, SR NITRATE
Reservoir:WATER, ISOPROPANOL
Refinement:The structure was refined using the NUCLSQ program. The R value is 20 for 1509 reflections in the resolution of 2.100 with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1D16

PubMed: 2299669




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