NDB ID: UH0005


Title:RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG
Molecular Description:5'-R(CpApApApGpApApApApG)-3'/5'-D(CpTpTp
TpTpCpTpTpTpG)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:C A A A G A A A A G
ChainB:(DC) (DT) (DT) (DT) (DT) (DC) (DT) (DT) (DT) (DG)
Primary Citation:Kopka, M.L., Lavelle, L., Han, G.W., Ng, H.L., Dickerson, R.E.
An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
J.Mol.Biol. , 334, pp. 653 - 665, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.701b = 41.073c = 46.116(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 13.2 for 16497 reflections in the resolution range 8.0 to 1.15 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1PJG

PubMed: 14636594




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey