NDB ID: UP0002


Title:CRYSTAL STRUCTURE OF A PEPTIDE NUCLEIC ACID DUPLEX (BT-PNA) CONTAINING A BICYCLIC ANALOGUE OF THYMINE
Molecular Description:PEPTIDE NUCLEIC ACID 5'-D(GPNOPNAPNTPN
APNCPNLYSNH2)-3'
Structural Features:DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D:(GPN) (OPN) (APN) (TPN) (APN) (CPN) K (NH2)
Primary Citation:Eldrup, A.B., Nielsen, B.B., Haaima, G., Rasmussen, H., Kastrup, J.S., Christensen, C., Nielsen, P.E.
1,8-Naphthyridin-2(1H)-ones. Novel Bicyclic and Tricyclic Analogues of Thymine in Peptide Nucleic Acids (PNAs)
Eur.J.Org.Chem. , 9, pp. 1781 - 1790, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   2
Cell Constants:
a = 30.340b = 45.000c = 49.280(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 20.8 for 4196 reflections in the resolution range 6.0 to 1.82 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1HZS




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