<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>13</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="13" comment="sequence number in pdb file">
           18   19   20   21   22   23   24   25   26   27 
           28   29   30 
         </numbering-table>
         <seq-data>
            CGGACCGAGC CAG
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>29.968 55.621 1.126</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>31.074 54.815 1.975</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>29.807 51.181 5.399</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>31.297 50.901 5.992</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>32.932 46.106 7.696</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="64">
                  <atom-type> P  </atom-type>
                     <coordinates>34.511 46.025 7.822</coordinates>
               </atom>
               <atom serial="72">
                  <atom-type> O3'</atom-type>
                     <coordinates>37.341 41.956 6.438</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="86">
                  <atom-type> P  </atom-type>
                     <coordinates>38.818 42.595 6.538</coordinates>
               </atom>
               <atom serial="94">
                  <atom-type> O3'</atom-type>
                     <coordinates>42.311 40.459 2.778</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="106">
                  <atom-type> P  </atom-type>
                     <coordinates>43.770 41.012 3.190</coordinates>
               </atom>
               <atom serial="114">
                  <atom-type> O3'</atom-type>
                     <coordinates>46.644 42.836 -0.384</coordinates>
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            </base>
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               <position>7</position>
               <base-type>G</base-type>
               <atom serial="126">
                  <atom-type> P  </atom-type>
                     <coordinates>47.940 42.736 0.582</coordinates>
               </atom>
               <atom serial="134">
                  <atom-type> O3'</atom-type>
                     <coordinates>51.289 46.507 -1.546</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>A</base-type>
               <atom serial="149">
                  <atom-type> P  </atom-type>
                     <coordinates>50.378 47.829 -1.631</coordinates>
               </atom>
               <atom serial="157">
                  <atom-type> O3'</atom-type>
                     <coordinates>53.044 51.793 -4.176</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="171">
                  <atom-type> P  </atom-type>
                     <coordinates>51.932 52.907 -4.479</coordinates>
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               <atom serial="179">
                  <atom-type> O3'</atom-type>
                     <coordinates>52.363 54.567 -9.966</coordinates>
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            <base>
               <position>10</position>
               <base-type>C</base-type>
               <atom serial="194">
                  <atom-type> P  </atom-type>
                     <coordinates>52.538 56.158 -10.055</coordinates>
               </atom>
               <atom serial="202">
                  <atom-type> O3'</atom-type>
                     <coordinates>49.697 60.270 -9.727</coordinates>
               </atom>
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               <position>11</position>
               <base-type>C</base-type>
               <atom serial="214">
                  <atom-type> P  </atom-type>
                     <coordinates>50.771 61.138 -8.878</coordinates>
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               <atom serial="222">
                  <atom-type> O3'</atom-type>
                     <coordinates>49.480 64.825 -5.727</coordinates>
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               <position>12</position>
               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>50.732 67.014 -0.088</coordinates>
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            </base>
            <base>
               <position>13</position>
               <base-type>G</base-type>
               <atom serial="256">
                  <atom-type> P  </atom-type>
                     <coordinates>52.180 67.380 0.529</coordinates>
               </atom>
               <atom serial="264">
                  <atom-type> O3'</atom-type>
                     <coordinates>53.764 67.137 5.675</coordinates>
               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>9</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>7</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>129.117 0.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>129.117 21.651</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>129.117 57.735</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>129.117 93.820</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>129.117 129.905</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>129.117 165.989</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>129.117 187.640</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>129.117 209.291</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>129.117 230.942</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>123.817 447.511</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>112.199 481.674</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>12</position></base-id>
                  <coordinates>100.581 515.837</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>13</position></base-id>
                  <coordinates>88.962 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
           39   40   41   42   43   44   45 
           46   47   48   49 
         </numbering-table>
         <seq-data>
            GCUGGGA GUCC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="284">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="299">
                  <atom-type> P  </atom-type>
                     <coordinates>56.002 49.725 2.678</coordinates>
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               <atom serial="307">
                  <atom-type> O3'</atom-type>
                     <coordinates>53.940 51.250 7.136</coordinates>
               </atom>
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            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="319">
                  <atom-type> P  </atom-type>
                     <coordinates>52.363 50.968 6.860</coordinates>
               </atom>
               <atom serial="327">
                  <atom-type> O3'</atom-type>
                     <coordinates>48.660 54.040 8.238</coordinates>
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            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="339">
                  <atom-type> P  </atom-type>
                     <coordinates>47.336 53.565 7.439</coordinates>
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               <atom serial="347">
                  <atom-type> O3'</atom-type>
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               <position>5</position>
               <base-type>G</base-type>
               <atom serial="362">
                  <atom-type> P  </atom-type>
                     <coordinates>42.679 55.664 5.332</coordinates>
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               <atom serial="370">
                  <atom-type> O3'</atom-type>
                     <coordinates>39.898 57.786 1.044</coordinates>
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               <position>6</position>
               <base-type>G</base-type>
               <atom serial="385">
                  <atom-type> P  </atom-type>
                     <coordinates>39.109 56.529 0.339</coordinates>
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               <atom serial="393">
                  <atom-type> O3'</atom-type>
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               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>U</base-type>
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                     <coordinates>37.747 45.619 -10.081</coordinates>
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                  <atom-type> O3'</atom-type>
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            </base>
            <base>
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                  <atom-type> P  </atom-type>
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               <atom serial="481">
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                     <coordinates>32.526 38.060 -6.031</coordinates>
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               <base-type>C</base-type>
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            <str-annotation>
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                     <seg-name>SG1</seg-name>
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               <single-strand>
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                     <seg-name>SG2</seg-name>
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                     <base-id-3p><base-id><position>6</position></base-id></base-id-3p>
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                  <coordinates>6.971 522.116</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>18.589 487.953</coordinates>
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                  <base-id><position>9</position></base-id>
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                  <base-id><position>10</position></base-id>
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      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
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                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
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                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
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                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>13</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <length>5</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
