NDB ID: UR0004


Title:CRYSTAL STRUCTURE OF AN RNA PSEUDOKNOT FROM BEET WESTERN YELLOW VIRUS INVOLVED IN RIBOSOMAL FRAMESHIFTING
Molecular Description:RNA PSEUDOKNOT
Structural Features:SINGLE STRAND, LOOPS, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainA: (GTP) G C G C G G C A C C G U C C G C G G A A C A A A C G G
Primary Citation:Su, L., Chen, L., Egli, M., Berger, J.M., Rich, A.
Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot.
Nat.Struct.Biol. , 6, pp. 285 - 292, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 32   1
Cell Constants:
a = 30.080b = 30.080c = 140.080(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:MgCl2, 2-BUTANOL, POTASSIUM MOPS, SPERMIDINE
Reservoir:2-BUTANOL
Refinement:The structure was refined using the CNS program. The R value is 20.7 for 7877 reflections in the resolution range 8.0 to 1.6 Ångstroms with Fobs > 2 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 437D

PubMed: 10074948




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