NDB ID: UR0008


Title:MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER
Molecular Description:VITAMIN B12 BINDING RNA
COBALAMIN (VITAMIN B12)
Structural Features:SINGLE STRAND, LOOPS, FLIPPED-OUT BASES, BASE TRIPLET
Nucleic Acid Sequence:
ChainsA, C, E, G: G G A A C C G G U G C G C A U A A C C A C C U C A G U G C G A G C A A
Primary Citation:Sussman, D., Nix, J.C., Wilson, C.
The structural basis for molecular recognition by the vitamin B 12 RNA aptamer.
Nat.Struct.Biol. , 7, pp. 53 - 57, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21
Cell Constants:
a = 91.330b = 161.880c = 100.960(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:LiCl, MgCl2, ISOPROPANOL
Reservoir:ISOPROPANOL
Refinement:The structure was refined using the CNS program. The R value is 20.4 for 13252 reflections in the resolution range 12.0 to 3.0 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Units
Enlarge Biological Unit 1
Enlarge Biological Unit 2
Enlarge Biological Unit 3
Enlarge Biological Unit 4



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)1234

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DDY

PubMed: 10625428




ndbadmin@ndbserver.rutgers.edu
©1995-2007 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey