NDB ID: UR0017


Title:HIV-1(MAL) RNA DIMERIZATION INITIATION SITE
Molecular Description:HIV-1 DIS(Mal)UU RNA
Structural Features:SINGLE STRAND, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA, B, C, D: U U U G C U G A G G U G C A C A C A G C A A U
Primary Citation:Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P.
Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site.
Nat.Struct.Biol. , 8, pp. 1064 - 1068, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 122.070b = 27.320c = 92.100(Ångstroms)
= 90.00 = 93.47 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:Isopropanol, MgCl2, spermine, cacodylate
Refinement:The structure was refined using the CNS 0.4 program. The R value is 22.7 for 4967 reflections in the resolution range 8.00 to 3.10 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Units
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1K9W

PubMed: 11702070




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