NDB ID: UR0019


Title:CRYSTAL STRUCTURE OF A RNA MOLECULE CONTAINING DOMAIN 5 AND 6 OF THE YEAST AI5G GROUP II SELF-SPLICING INTRON
Molecular Description:ai5g group II Self-splicing intron
Structural Features:SINGLE STRAND, LOOP, BULGE
Nucleic Acid Sequence:
ChainA: G U C U A C C U A U C G G G C U A A G G A G C C G U A U G C G A U G A A A G U C G C A C G U A C G G U U C U A U G C C C G G G G G A A A A C
Primary Citation:Zhang, L., Doudna, J.A.
Structural insights into group II intron catalysis and branch-site selection.
Science , 295, pp. 2084 - 2088, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 90.987b = 90.987c = 235.891(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:HEPES-KOH, MgCl, ammonium sulfate, spermine
Refinement:The structure was refined using the CNS program. The R value is 24.76 for 10014 reflections in the resolution range 30 to 3.0 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Unit 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1KXK

PubMed: 11859154




ndbadmin@ndbserver.rutgers.edu
©1995-2007 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey