NDB ID: UR0030


Title:THE LEADZYME RIBOZYME BOUND TO MG(H2O)6(II) AND SR(II) AT 1.8 A RESOLUTION
Molecular Description:5'-R(CpGpGpApCpCpGpApGpCpCpApG)-3'
Structural Features:DOUBLE HELIX, bulge, flipped-out bases, overhanging bases
Nucleic Acid Sequence:
ChainsA,C,E,G:C G G A C C G A G C C A G
ChainsB,D,F,H:G C U G G G A G U C C
Primary Citation:Wedekind, J.E., McKay, D.B.
Crystal structure of the leadzyme at 1.8 A resolution: metal ion binding and the implications for catalytic mechanism and allo site ion regulation.
BIOCHEMISTRY , 42, pp. 9554 - 9563, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61
Cell Constants:
a = 60.600b = 60.600c = 133.100(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 21.0 for 23406 reflections in the resolution range 28.10 to 1.81 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
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Enlarge Biological Assembly 3
Enlarge Biological Assembly 4



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)1234

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1NUV

PubMed: 12911297




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