NDB ID: UR0031


Title:CRYSTAL STRUCTURE OF A BULGED RNA TETRAPLEX: IMPLICATIONS FOR A NOVEL BINDING SITE IN RNA TETRAPLEX
Molecular Description:5'-D(UpG)-R(pUpGpGpU)-3'
Structural Features:QUADRUPLE HELIX, bulge
Nucleic Acid Sequence:
ChainA: U G U G G U
Primary Citation:Pan, B., Xiong, Y., Shi, K., Sundaralingam, M.
Crystal Structure of a Bulged RNA Tetraplex at 1.1 A Resolution: Implications for a Novel Binding Site in RNA Tetraplex
STRUCTURE , 11, pp. 1423 - 1430, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   2
Cell Constants:
a = 35.014b = 35.014c = 22.257(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:spermine, potassium chloride, MPD, cacodylate
Reservoir:potassium chloride, MPD
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 12.678 for 5382 reflections in the resolution range 16.55 to 1.10 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1P79

PubMed: 14604532




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