NDB ID: UR0032


Title:HAMMERHEAD RIBOZYME WITH 5'-5' G-G LINKAGE: CONFORMATIONAL CHANGE EXPERIMENT
Molecular Description:5'-R(GpGpUpGpGpUpCpUpGpApUpGpApGpGpCp
C)-3'/Ribozyme
Structural Features:A DOUBLE HELIX, HAMMERHEAD, RNA HAMMERHEAD RIBOZYME, LOOP, HAIRPIN LOOP
Nucleic Acid Sequence:
ChainA: G G U G G U C U G A U G A G G C C
ChainB: G C C G A A A C U C G U A A G A G U C A C C A C
Primary Citation:Dunham, C.M., Murray, J.B., Scott, W.G.
A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.
J.Mol.Biol. , 332, pp. 327 - 336, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 31   1
Cell Constants:
a = 66.689b = 66.689c = 140.528(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 24.196 for 6872 reflections in the resolution range 19.80 to 3.00 Ångstroms with Fobs > 0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1Q29

PubMed: 12948485




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