NDB ID: UR0037


Title:CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA
Molecular Description:5'-R(GpGpUpGpGpUpGp(MTU)pApGpUpCpGpCpUp
GpG)-3'
Structural Features:DOUBLE HELIX, OVERHANGING BASES, internal loop, flipped out bases
Nucleic Acid Sequence:
ChainsA,C:G G U G G U G (MTU) A G U C G C U G G
ChainsB,D:C A G C G U C A C A C C A C C C
Primary Citation:Shandrick, S., Zhao, Q., Han, Q., Ayida, B.K., Takahashi, M., Winters, G.C., Simonsen, K.B., Vourloumis, D., Hermann, T.
Monitoring molecular recognition of the ribosomal decoding site.
Angew.Chem.Int.Ed.Engl. , 43, pp. 3177 - 3182, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 31.640b = 87.320c = 32.790(Ångstroms)
= 90.00 = 93.27 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 20.5 for 8285 reflections in the resolution range 8. to 2.2 Ångstroms with I > 0.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1T0D

PubMed: 15199571




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