NDB ID: UR0044


Title:THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME
Molecular Description:s2m RNA
Structural Features:SINGLE STRAND, BULGE, FLIPPED-OUT BASE, OVERHANGING BASE, HAIRPIN LOOP
Nucleic Acid Sequence:
ChainA: (GTP) G A G U U C A C C G A G G C C A C G C G G A G U A C G A U C G A G G G U A C A G U G A A U U
Primary Citation:Robertson, M.P., Igel, H., Baertsch, R., Haussler, D., Ares Jr., M., Scott, W.G.
The structure of a rigorously conserved RNA element within the SARS virus genome
Plos Biol. , 3, pp. 86 - 94, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 65   2
Cell Constants:
a = 93.218b = 93.218c = 128.109(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:Tris, NaCl, MgCl2, MES, Mg(OAc)-2, MPD
Reservoir:NaCl, MgCl2, MES, MPD
Refinement:The structure was refined using the REFMAC 5.2.0003 program. The R value is 23.136 for 8516 reflections in the resolution range 80.85 to 2.70 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1XJR

PubMed: 15630477




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