NDB ID: UR0074


Title:CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8MTU)
Molecular Description:ribozyme
Structural Features:DOUBLE HELIX, bulges, overhanging bases, RNA HAMMERHEAD RIBOZYME
Nucleic Acid Sequence:
ChainA:U C C C A G U C C A C C G
ChainB:C G G U G A (MTU) A A G G G
ChainC:G G C A G A G A A A C A C A C G A
ChainD:U C G U G G U A C A U U A C C U G C C
Primary Citation:Salter, J.D., Krucinska, J., Alam, S., Grum-Tokars, V., Wedekind, J.E.
Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer.
Biochemistry , 45, pp. 686 - 700, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 93.900b = 93.900c = 129.180(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 24.4 for 9550 reflections in the resolution range 38.06 to 2.70 Ångstroms with I > -3. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2BCY

PubMed: 16411744




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