NDB ID: ZD0006


Title:CRYSTAL STRUCTURE OF A COPPER-MEDIATED BASE PAIR IN DNA
Molecular Description:5'-D(CpGpCpGp(DPY)pApTp(DRP)pCpGpCpG)-3'
Structural Features:Z DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DPY) (DA) (DT) (DRP) (DC) (DG) (DC) (DG)
Primary Citation:Atwell, S., Meggers, E., Spraggon, G., Schultz, P.G.
Structure of a Copper-Mediated Base Pair in DNA
J.Am.Chem.Soc. , 123, pp. 12364 - 12367, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 25.343b = 34.359c = 31.093(Ångstroms)
= 90.00 = 101.13 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:MPD, Na Cacodylate, Spermine tetra-HCl, NaCl, MgCl2
Refinement:The structure was refined using the CNS program. The R value is 16.9 for 8520 reflections in the resolution range 50 to 1.5 Ångstroms with I > 0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1JES

PubMed: 11734038




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