NDB ID: ZD0008


Title:CRYSTAL STRUCTURE OF RGD(CGCGCG) FORMING HEXAMER Z-DNA DUPLEX WITH 5'-(RG) OVERHANG
Molecular Description:5'-R(G)D(CpGpCpGpCpG)-3'
Structural Features:Z DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DG) (DC) (DG) (DC) (DG) (DC) (DG)
Primary Citation:Pan, B., Sundaralingam, M.
Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang.
Acta Crystallogr.,Sect.D , 59, pp. 433 - 437, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 17.96b = 31.47c = 44.73(Ångstroms)
= 90.0 = 90.0 = 90.0(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:Spermine tetrachloride, MgCl2, cacodylate
Reservoir:2-propanol, MgCl2
Refinement:The structure was refined using the CNS 1.1 program. The R value is 16.2 for 3537 reflections in the resolution range 8.00 to 1.54 Ångstroms with Fobs > 1.0 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1M6R

PubMed: 12595699




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