NDB ID: ZD0016


Title:CRYSTAL STRUCTURE OF D(CACGTG)2
Molecular Description:5'-D(CpApCpGpTpG)-3'
Structural Features:Z DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DA) (DC) (DG) (DT) (DG)
Primary Citation:Narayana, N., Shamala, N., Ganesh, K.N., Viswamitra, M.A.
Interaction between the Z-Type DNA Duplex and 1,3-Propanediamine: Crystal Structure of d(CACGTG)2 at 1.2 A Resolution
Biochemistry , 45, pp. 1200 - 1211, 2006.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 18.420b = 30.740c = 43.180(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:sodium cacodylate, SrCl2, spermine, Isopropanol, H2O
Reservoir:sodium cacodylate, SrCl2, H2O
Refinement:The structure was refined using the X-PLOR program. The R value is 18 for 5687 reflections in the resolution range 6.0 to 1.2 Ångstroms with I > 4.0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 2F8W

PubMed: 16430216




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