NDB ID: ZDH030


Title:CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURES
Molecular Description:5'-D(CpGpCpIpCpIpCpG)-3'
Structural Features:Z DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG)
ChainsC, D: (DC) (DG) (DC) (DG)
Primary Citation:Kumar, V.D., Harrison, R.W., Andrews, L.C., Weber, I.T.
Crystal structure at 1.5-A resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures.
Biochemistry , 31, pp. 1541 - 1550, 1992.
Experimental Information:X-RAY DIFFRACTION
Space Group: 65
Cell Constants:
a = 31.000b = 31.000c = 43.700(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:WATER, MPD, SPERMINE, Mg ACETATE
Refinement:The structure was refined using the X-PLOR, NUCLSQ program. The R value is 22.5 for 2503 reflections in the resolution range 5.000 to 1.500 Ångstroms with Fobs > 3.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1D53

PubMed: 1737011




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