<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
           11 
         </numbering-table>
         <seq-data>
            aaagauaucu u
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>10</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>11</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>a</base-type>
               <atom serial="16">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.406 -22.535 -8.726</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>a</base-type>
               <atom serial="19">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.945 -22.124 -8.772</coordinates>
               </atom>
               <atom serial="37">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.325 -21.941 -3.992</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>a</base-type>
               <atom serial="40">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.715 -21.297 -3.576</coordinates>
               </atom>
               <atom serial="58">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.686 -18.745 1.393</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>g</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.493 -17.636 2.183</coordinates>
               </atom>
               <atom serial="80">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.950 -14.358 5.400</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>a</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.139 -14.505 7.018</coordinates>
               </atom>
               <atom serial="101">
                  <atom-type> O3'</atom-type>
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               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>u</base-type>
               <atom serial="104">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.784 -8.566 8.560</coordinates>
               </atom>
               <atom serial="120">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.158 -4.681 8.048</coordinates>
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            <base>
               <position>7</position>
               <base-type>a</base-type>
               <atom serial="124">
                  <atom-type> P  </atom-type>
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               <atom serial="142">
                  <atom-type> O3'</atom-type>
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            <base>
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               <base-type>u</base-type>
               <atom serial="145">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.506 2.816 7.342</coordinates>
               </atom>
               <atom serial="161">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.825 5.717 3.914</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>c</base-type>
               <atom serial="165">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.893 6.852 3.940</coordinates>
               </atom>
               <atom serial="181">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.865 7.568 -0.517</coordinates>
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            </base>
            <base>
               <position>10</position>
               <base-type>u</base-type>
               <atom serial="184">
                  <atom-type> P  </atom-type>
                     <coordinates>-11.130 8.510 -0.688</coordinates>
               </atom>
               <atom serial="200">
                  <atom-type> O3'</atom-type>
                     <coordinates>-14.431 6.537 -5.117</coordinates>
               </atom>
            </base>
            <base>
               <position>11</position>
               <base-type>u</base-type>
               <atom serial="204">
                  <atom-type> P  </atom-type>
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               <atom serial="220">
                  <atom-type> O3'</atom-type>
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               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>1</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <base-conformation>
                  <base-id><position>2</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>11</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>129.412 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>129.412 32.353</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
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               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
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               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
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               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>129.412 248.039</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>129.412 301.961</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>129.412 355.882</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>129.412 409.804</coordinates>
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               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>129.412 463.725</coordinates>
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               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>129.412 517.647</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
           10   11 
         </numbering-table>
         <seq-data>
            aaagauauc uu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>10</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>11</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>a</base-type>
               <atom serial="239">
                  <atom-type> O3'</atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="260">
                  <atom-type> O3'</atom-type>
                     <coordinates>-22.185 -5.476 3.920</coordinates>
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            </base>
            <base>
               <position>3</position>
               <base-type>a</base-type>
               <atom serial="263">
                  <atom-type> P  </atom-type>
                     <coordinates>-21.739 -6.920 3.471</coordinates>
               </atom>
               <atom serial="281">
                  <atom-type> O3'</atom-type>
                     <coordinates>-19.256 -7.117 -1.477</coordinates>
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            </base>
            <base>
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               <base-type>g</base-type>
               <atom serial="284">
                  <atom-type> P  </atom-type>
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               <atom serial="303">
                  <atom-type> O3'</atom-type>
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            <base>
               <position>5</position>
               <base-type>a</base-type>
               <atom serial="306">
                  <atom-type> P  </atom-type>
                     <coordinates>-14.784 -5.082 -7.120</coordinates>
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               <atom serial="324">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.085 -1.966 -8.189</coordinates>
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            </base>
            <base>
               <position>6</position>
               <base-type>u</base-type>
               <atom serial="327">
                  <atom-type> P  </atom-type>
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               <atom serial="343">
                  <atom-type> O3'</atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>2.837 -2.717 -7.260</coordinates>
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               <atom serial="384">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.466 -6.365 -3.908</coordinates>
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               <position>9</position>
               <base-type>c</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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            <base>
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                  <atom-type> P  </atom-type>
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               <atom serial="423">
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                  <atom-type> P  </atom-type>
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               <atom serial="443">
                  <atom-type> O3'</atom-type>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>1</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <base-conformation>
                  <base-id><position>2</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <single-strand>
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                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
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            <secondary-structure-display comment="x,y coodinates">
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                  <coordinates>0.000 550.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 517.647</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 463.725</coordinates>
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               <ss-base-coord>
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               <ss-base-coord>
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                  <coordinates>0.000 248.039</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 194.118</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 140.196</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
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               <ss-base-coord>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <length>10</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
