CELL DIMENSIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------------ NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------ AR0005 5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3' C 2 Y 38.49 32.30 38.76 90.00 117.56 90.00 AR0007 5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' C 2 Y 71.34 39.98 32.47 90.00 104.70 90.00 AR0023 5'-R(*AP*AP*CP*GP*GP*GP*CP*GP*CP*AP*GP*AP*A)-3', C 2 Y 5'- R(*UP*CP*UP*GP*AP*CP*GP*GP*UP*AP*CP*GP*UP*UP*U)-3' 74.50 24.30 46.10 90.00 116.70 90.00 AR0024 29-MER FRAGMENT OF SRP RNA HELIX 6 P 31 2 1 Y 42.98 42.98 231.42 90.00 90.00 120.00 AR0026 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- P 42 21 2 Y R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3' 57.15 57.15 43.54 90.00 90.00 90.00 AR0027 5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3', 5'- P 43 21 2 Y R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3' 32.78 32.78 102.50 90.00 90.00 90.00 AR0028 REV BINDING ELEMENT P 1 Y 23.99 53.93 64.73 114.52 89.88 102.85 AR0029 (5'- C 2 Y R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)CP*C)- 3') 60.06 29.10 52.57 90.00 120.69 90.00 AR0032 BPS-U2 SNRNA DUPLEX P 21 Y 28.75 42.40 33.14 90.00 92.87 90.00 AR0033 5'- C 2 Y R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(BRO)CP*C)- 3' 60.04 29.53 52.44 90.00 120.83 90.00 ------------------------------------------------------------------------------ Page 1 created by the NDB Project on Wed May 26 14:22:36 2004 CELL DIMENSIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------------ NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------ AR0034 5'-R(*GP*UP*GP*UP*CP*GP*(BRO)CP*AP*C)-3' P 41 2 2 Y 47.18 47.18 80.04 90.00 90.00 90.00 AR0035 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3' P 41 21 2 Y 45.80 45.80 89.65 90.00 90.00 90.00 AR0039 5'- P 63 2 2 Y R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(B RO)UP*CP*CP*C)-3' 45.34 45.34 95.13 90.00 90.00 120.00 AR0041 5'-R(*GP*CP*GP*UP*CP*AP*GP*GP*UP*CP*(CB2)CP*G)-3' P 43 2 2 Y 35.61 35.61 133.96 90.00 90.00 90.00 AR0044 5'- P 31 2 1 Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP *CP*AP*GP*CP*AP*AP*G)-3' 59.33 59.33 63.68 90.00 90.00 120.00 AR0045 5'- P 31 2 1 Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP *CP*AP*GP*CP*AP*AP*G)-3' 59.10 59.10 64.10 90.00 90.00 120.00 AR0046 HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED P 31 2 1 Y 59.10 59.10 64.10 90.00 90.00 120.00 ARHB90 5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3' P 61 2 2 Y 39.05 39.05 58.85 90.00 90.00 120.00 DR0009 5'- I 4 Y R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP *UP*CP*UP*GP*CP*C)-3', Streptomycin 83.10 83.10 49.47 90.00 90.00 90.00 DR0010 5'- I 4 Y R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP *UP*CP*UP*GP*CP*C)-3', Streptomycin 82.63 82.63 49.15 90.00 90.00 90.00 ------------------------------------------------------------------------------ Page 2 created by the NDB Project on Wed May 26 14:22:36 2004 CELL DIMENSIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------------ NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------ UR0001 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3', P 61 2 2 Y 5'-R(*GP*CP*UP*GP*GP*GP*AP*GP*UP*CP*C)-3' 60.40 60.40 133.10 90.00 90.00 120.00 UR0005 5'- P 31 2 1 Y R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP *CP*AP*GP*CP*AP*AP*G)-3' 59.10 59.10 64.00 90.00 90.00 120.00 UR0009 4.5S RNA DOMAIN IV P 32 2 1 Y 69.70 69.70 84.10 90.00 90.00 120.00 UR0025 RNA BCh12, Short and Long strands C 2 Y 30.17 62.51 50.93 90.00 98.76 90.00 UR0028 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' P 61 Y 60.10 60.10 133.10 90.00 90.00 120.00 UR0030 5'-R(*CP*GP*GP*AP*CP*CP*GP*AP*GP*CP*CP*AP*G)-3' P 61 Y 60.60 60.60 133.10 90.00 90.00 120.00 URF042 5'-R(*UP*UP*CP*GP*CP*G)-3' C 2 2 21 Y 30.60 34.00 29.20 90.00 90.00 90.00 URL029 5'-R(*GP*GP*AP*CP*UP*UP*UP*GP*GP*UP*CP*C)-3' P 41 Y 32.44 32.44 85.48 90.00 90.00 90.00 URL050 5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3' P 1 Y 29.44 28.91 46.46 98.87 72.95 96.16 URL051 5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)-3', MN P 65 2 2 Y 2+ 37.71 37.71 88.30 90.00 90.00 120.00 ------------------------------------------------------------------------------ Page 3 created by the NDB Project on Wed May 26 14:22:36 2004 CELL DIMENSIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ------------------------------------------------------------------------------ NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------ URL064 5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)-3', C 2 Y LOOP E FROM 5S RRNA 71.18 37.65 32.94 90.00 105.90 90.00 URL066 FRAGMENT I FROM 5S RRNA P 61 2 2 Y 58.67 58.67 248.84 90.00 90.00 120.00 URL069 FRAGMENT I FROM 5S RRNA P 61 2 2 Y 59.03 59.03 254.07 90.00 90.00 120.00 URX075 5'- P 1 Y R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP*G)-3' 27.10 27.10 31.60 69.20 77.50 63.00 ------------------------------------------------------------------------------ Page 4 created by the NDB Project on Wed May 26 14:22:36 2004