CELL DIMENSIONS FOR B-DNA'S WITH SPECIAL FEATURES ------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------- BD0006 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' P 21 21 21 Y 26.11 36.45 52.56 90.00 90.00 90.00 BD0008 CROSSLINKED 5'- P 21 21 21 Y D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3' 24.54 39.30 66.96 90.00 90.00 90.00 BD0014 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' R 3 Y 41.12 41.12 99.91 90.00 90.00 120.00 BD0017 5'- P 42 Y D(*CP*(BRO)UP*CP*CP*(BRO)UP*CP*CP*GP*CP*GP*CP*G)- 3', 5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3' 53.80 53.80 43.10 90.00 90.00 90.00 BD0018 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' R 3 Y 38.76 38.76 99.08 90.00 90.00 120.00 BD0019 5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' R 3 Y 41.99 41.99 99.55 90.00 90.00 120.00 BD0020 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3' R 3 Y 42.31 42.31 99.68 90.00 90.00 120.00 BD0022 5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3', 5'- R 3 Y D(*TP*GP*TP*GP*GP*CP*GP*CP*CP*GP*GP*T)-3' 65.90 65.90 47.10 90.00 90.00 120.00 BD0027 5'-D(*CP*CP*GP*AP*AP*(BRO)UP*GP*AP*GP*G)-3' C 2 2 21 Y 20.95 61.86 68.49 90.00 90.00 90.00 BD0032 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' P 32 1 2 Y 26.39 26.39 98.78 90.00 90.00 120.00 ------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:22:17 2004 CELL DIMENSIONS FOR B-DNA'S WITH SPECIAL FEATURES ------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------- BD0037 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3' P 21 21 21 Y 21.94 36.54 52.73 90.00 90.00 90.00 BD0056 5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3' P 21 21 21 Y 27.14 41.50 52.69 90.00 90.00 90.00 BD0061 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(EDC)P*GP*CP*G)-3' P 32 1 2 Y 26.72 26.72 101.54 90.00 90.00 120.00 BD0070 5'- R 3 2 Y D(*CP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP *C)-3' 38.92 38.92 158.91 90.00 90.00 120.00 BDF062 5'-D(*CP*GP*GP*TP*GP*G)-3', SPERMINE P 61 2 2 Y 54.45 54.45 42.10 90.00 90.00 120.00 BDF068 5'-D(*CP*TP*CP*GP*AP*G)-3' P 62 2 2 Y 40.14 40.14 44.47 90.00 90.00 120.00 BDL021 5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)-3'/ 5'- P 21 21 21 Y D(*CP*GP*CP*GP*TP*T)-3'+ 5'-D(*TP*TP*CP*GP*CP*G)- 3', MODEL A4 25.99 44.03 66.62 90.00 90.00 90.00 BDL032 5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)-3'/ 5'- P 21 21 21 Y D(*CP*GP*CP*GP*TP*T*)-3'+ 5'-D(*TP*TP*CP*GP*CP*G)- 3', MODEL T4 25.99 44.03 66.62 90.00 90.00 90.00 BDL034 5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3',-15 C R 3 n.a. 64.50 64.50 47.50 90.00 90.00 120.00 DD0062 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-amino-[N-(2- C 2 2 2 Y dimethylamino)proply]-acridine-4-carboxamide 28.75 52.12 40.74 90.00 90.00 90.00 ------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:22:17 2004 CELL DIMENSIONS FOR B-DNA'S WITH SPECIAL FEATURES ------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------- UD0012 PEPTIDYL-D(CGCAATTGCG) C 2 2 21 Y 27.92 44.09 53.22 90.00 90.00 90.00 UD0023 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' C 2 Y 65.59 23.63 37.22 90.00 111.15 90.00 UD0024 CCGGTACCGG C 2 Y 65.95 23.76 37.20 90.00 109.98 90.00 UD0025 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' C 2 Y 66.38 23.79 37.12 90.00 110.13 90.00 UD0026 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' C 2 Y 63.73 25.32 36.49 90.00 110.11 90.00 UD0028 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3' C 2 Y 66.51 24.18 37.00 90.00 110.01 90.00 UD0030 5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3' C 2 Y 64.84 22.58 38.07 90.00 106.78 90.00 UDH052 5'-CD(*P*AP*TP*TP*CP*AP*TP*TP*C)-3' P 21 21 21 Y 22.84 27.68 55.37 90.00 90.00 90.00 UDI030 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3' P 21 21 21 Y 22.24 37.01 54.10 90.00 90.00 90.00 UDI047 5'-D(*GP*CP*GP*TP*AP*CP*GP*CP*G)-3' P 42 21 2 Y 38.91 38.91 33.03 90.00 90.00 90.00 ------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:22:17 2004 CELL DIMENSIONS FOR B-DNA'S WITH SPECIAL FEATURES ------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord ------------------------------------------------------------------------------- UDJ031 5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3' I 21 21 21 Y 27.01 39.26 54.06 90.00 90.00 90.00 UDJ049 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' P 21 21 21 Y 26.25 36.82 53.23 90.00 90.00 90.00 UDJ060 5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3' P 21 Y 26.45 34.66 32.17 90.00 113.40 90.00 UDM010 5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' C 2 Y 78.48 42.84 25.16 90.00 99.36 90.00 UDM017 5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', C 2 n.a. SOAKED W/PROFLAVIN 80.81 42.97 25.57 90.00 99.60 90.00 UDO009 5'- I 2 2 2 n.a. D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*AP*CP*GP*CP*G)-3' 37.30 54.60 104.80 90.00 90.00 90.00 ------------------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:22:17 2004