CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0002 INTRON-ENCODED ENDONUCLEASE I-PPOI/DNA COMPLEX P 31 2 1 Y 113.70 113.70 88.40 90.00 90.00 120.00 PD0003 CRE RECOMBINASE/DNA COMPLEX C 2 2 21 Y 107.70 121.00 180.40 90.00 90.00 90.00 PD0005 HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB P 32 1 2 Y 28/DNA COMPLEX 169.00 169.00 221.00 90.00 90.00 120.00 PD0006 RESTRICTION ENDONUCLEASE PVUII (MUTANT D34G)/DNA P 21 21 21 Y COMPLEX 95.80 86.30 48.50 90.00 90.00 90.00 PD0009 3-METHYLADENINE DNA GLYCOSYLASE P 21 21 21 Y (E.C.3.2.2.21)/DNA COMPLEX 43.75 57.10 128.45 90.00 90.00 90.00 PD0010 ECORV ENDONUCLEASE/DNA COMPLEX P 1 Y 49.40 50.20 64.10 96.00 109.00 108.00 PD0011 RESTRICTION ENDONUCLEASE (E.C.3.1.21.4)/DNA P 21 21 21 Y COMPLEX 95.80 86.30 48.50 90.00 90.00 90.00 PD0013 ECORV ENDONUCLEASE/DNA COMPLEX P 1 Y 49.60 50.40 63.90 96.40 109.20 108.50 PD0014 KLENOW FRAGMENT/DNA COMPLEX P 43 Y 102.90 102.90 86.40 90.00 90.00 90.00 PD0015 KLENOW FRAGMENT OF DNA POLYMERASE I/DNA COMPLEX P 43 Y 102.90 102.90 86.40 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0017 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA R 3 2 Y COMPLEX 99.86 99.86 325.20 90.00 90.00 120.00 PD0018 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA R 3 2 Y COMPLEX 99.86 99.86 325.20 90.00 90.00 120.00 PD0019 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA R 3 2 Y COMPLEX 99.86 99.86 325.20 90.00 90.00 120.00 PD0023 REVERSE TRANSCRIPTASE (E.C.2.7.7.49) MUTANT (P1K, P 21 21 21 Y Q258C, E478Q)/DNA COMPLEX 78.84 150.70 280.88 90.00 90.00 90.00 PD0026 ENDONUCLEASE I-CREI/DNA COMPLEX P 21 21 21 Y 67.56 89.26 177.52 90.00 90.00 90.00 PD0029 PROTEIN (ENDONUCLEASE BAMHI) (3.1.21.4)/DNA P 21 21 21 Y COMPLEX 105.20 79.40 66.40 90.00 90.00 90.00 PD0030 LARGE FRAGMENT OF DNA POLYMERASE I/DNA COMPLEX P 31 2 1 Y 108.41 108.41 89.84 90.00 90.00 120.00 PD0031 PROTEIN (RESTRICTION ENDONUCLEASE BAMHI) P 21 21 21 Y (3.1.21.4)/DNA COMPLEX 106.40 79.60 67.60 90.00 90.00 90.00 PD0032 LARGE FRAGMENT OF DNA POLYMERASE I/DNA COMPLEX P 31 2 1 Y 108.03 108.03 90.17 90.00 90.00 120.00 PD0033 LARGE FRAGMENT OF DNA POLYMERASE I/DNA COMPLEX P 31 2 1 Y 110.84 110.84 90.84 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0034 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA R 3 2 Y COMPLEX 99.86 99.86 325.20 90.00 90.00 120.00 PD0037 RESTRICTION ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA P 1 Y COMPLEX 48.64 49.37 63.89 96.94 108.66 107.53 PD0038 RESTRICTION ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA P 1 Y COMPLEX 48.48 48.63 63.86 97.03 108.87 107.03 PD0039 RESTRICTION ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA P 1 Y COMPLEX 48.35 48.78 63.64 96.61 108.94 107.44 PD0040 RESTRICTION ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA P 1 Y COMPLEX 48.65 49.22 64.04 96.65 108.91 107.53 PD0041 URACIL-DNA GLYCOSYLASE/DNA COMPLEX P 21 21 21 Y 48.83 65.66 97.15 90.00 90.00 90.00 PD0043 HELICASE PCRA (E.C.3.6.1.-)/DNA COMPLEX P 21 Y 85.05 62.60 141.83 90.00 95.84 90.00 PD0044 HELICASE PCRA (E.C. 3.6.1.-)/DNA COMPLEX P 61 2 2 Y 105.12 105.12 380.80 90.00 90.00 120.00 PD0047 CRE RECOMBINASE/DNA COMPLEX C 2 2 21 Y 108.80 122.10 181.00 90.00 90.00 90.00 PD0048 BACTERIOPHAGE P1 CRE GENE/DNA COMPLEX C 2 2 21 Y 107.10 123.10 180.00 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0049 ENDONUCLEASE/DNA COMPLEX P 3 2 1 Y 118.11 118.11 49.45 90.00 90.00 120.00 PD0052 URACIL-DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA COMPLEX P 21 21 2 Y 121.70 48.50 65.00 90.00 90.00 90.00 PD0053 URACIL-DNA GLYCOSYLASE/DNA COMPLEX P 21 21 2 Y 120.30 48.80 65.60 90.00 90.00 90.00 PD0054 ENDONUCLEASE/DNA COMPLEX P 3 2 1 Y 117.83 117.83 48.99 90.00 90.00 120.00 PD0055 ENDONUCLEASE ECORI/DNA COMPLEX P 3 2 1 Y 118.40 118.40 49.70 90.00 90.00 120.00 PD0062 RESTRICTION ENDONUCLEASE ECO-RI/DNA COMPLEX P 3 2 1 Y 118.40 118.40 49.70 90.00 90.00 120.00 PD0063 ECO RI ENDONCULEASE/DNA COMPLEX P 3 2 1 Y 118.40 118.40 49.70 90.00 90.00 120.00 PD0064 KLENOW FRAGMENT OF DNA POLYMERASE I P 43 Y (E.C.2.7.7.7)/DNA COMPLEX 103.30 103.30 86.50 90.00 90.00 90.00 PD0065 KLENOW FRAGMENT OF DNA POLYMERASE I P 31 2 1 Y (E.C.2.7.7.7)/DNA COMPLEX 107.94 107.94 90.24 90.00 90.00 120.00 PD0066 KLENOW FRAGMENT OF DNA POLYMERASE I P 31 2 1 Y (E.C.2.7.7.7)/DNA COMPLEX 108.56 108.56 90.53 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0067 DNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 31 2 1 Y 107.99 107.99 90.20 90.00 90.00 120.00 PD0068 ENDONUCLEASE IV (E.C.3.1.21.2)/DNA C 2 Y 133.12 58.73 51.15 90.00 94.97 90.00 PD0072 DNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 43 Y 101.88 101.88 85.18 90.00 90.00 90.00 PD0079 DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX R 3 Y 209.74 209.74 114.25 90.00 90.00 120.00 PD0080 DNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 43 Y 102.65 102.65 86.30 90.00 90.00 90.00 PD0085 BSOBI RESTRICTION ENDONUCLEASE (E.C.3.1.21.4)/DNA P 21 21 21 Y COMPLEX 80.29 87.82 99.45 90.00 90.00 90.00 PD0086 BACTERIOPHAGE T7 RNA POLYMERASE/DNA COMPLEX P 21 21 2 Y 220.10 73.30 80.90 90.00 90.00 90.00 PD0093 MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE I 41 Y (E.C.4.2.99.18)/DNA COMPLEX 122.85 122.85 107.07 90.00 90.00 90.00 PD0094 MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE P 21 21 21 Y (E.C.4.2.99.18)/DNA COMPLEX 90.06 98.35 101.05 90.00 90.00 90.00 PD0095 MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE P 21 Y (E.C.4.2.99.18)/DNA COMPLEX 71.22 72.25 93.75 90.00 94.29 90.00 -------------------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0096 INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI P 31 2 1 Y (E.C.3.1.-.-)/DNA COMPLEX 113.87 113.87 89.04 90.00 90.00 120.00 PD0097 INTRON-ENCODED HOMING ENDONUCLEASE I-PPOI P 31 2 1 Y (E.C.3.1.-.-)/DNA COMPLEX 113.87 113.87 89.04 90.00 90.00 120.00 PD0098 HOLLIDAY JUNCTION DNA HELICASE RUVA/DNA COMPLEX C 2 Y 148.00 148.00 105.60 90.00 123.00 90.00 PD0099 3-METHYLADENINE DNA GLYCOSYLASE II P 31 2 1 Y (E.C.3.2.2.21)/DNA COMPLEX 82.40 82.40 199.70 90.00 90.00 120.00 PD0100 DNA MISMATCH ENDONUCLEASE (E.C.3.1.-.-)/DNA P 65 Y COMPLEX 63.00 63.00 152.50 90.00 90.00 120.00 PD0101 ENDONUCLEASE BGLII/DNA COMPLEX P 21 21 21 Y 48.70 101.80 116.90 90.00 90.00 90.00 PD0103 CRE RECOMBINASE/DNA COMPLEX C 2 2 21 Y 106.90 122.50 180.00 90.00 90.00 90.00 PD0104 CRE RECOMBINASE MUTANT (R173K)/DNA COMPLEX C 2 2 21 Y 106.30 122.70 179.50 90.00 90.00 90.00 PD0105 PDNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 43 Y 102.60 102.60 86.20 90.00 90.00 90.00 PD0106 DNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 43 Y 101.70 101.70 85.70 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0108 BGLI RESTRICTION ENDONUCLEASE (E.C.3.1.21.4)/DNA C 2 2 21 Y COMPLEX 78.48 81.60 117.06 90.00 90.00 90.00 PD0113 CRE RECOMBINASE/DNA COMPLEX I 2 3 Y 160.99 160.99 160.99 90.00 90.00 90.00 PD0117 8-OXOGUANINE DNA GLYCOSYLASE/DNA COMPLEX P 65 2 2 Y 92.36 92.36 212.87 90.00 90.00 120.00 PD0125 DNA TOPOISOMERASE I (E.C.5.99.1.2)/DNA COMPLEX P 21 Y 56.98 124.92 72.29 90.00 93.84 90.00 PD0126 REVERSE TRANSCRIPTASE (E.C.2.7.7.49)/DNA COMPLEX P 21 Y 61.14 38.43 129.75 90.00 100.58 90.00 PD0127 URACIL-DNA GLYCOSYLASE (E.C.3.2.2.3)/DNA COMPLEX P 21 21 21 Y 48.66 64.81 94.96 90.00 90.00 90.00 PD0128 URACIL-DNA GLYCOSYLASE (E.C.3.2.2.3)/DNA COMPLEX P 21 21 21 Y 48.55 64.85 96.01 90.00 90.00 90.00 PD0129 TYPE II RESTRICTION ENZYME ECORV P 1 Y (E.C.3.1.21.4)/DNA COMPLEX 48.00 48.50 63.80 97.00 108.90 106.30 PD0130 TYPE II RESTRICTION ENZYME ECORV P 1 Y (E.C.3.1.21.4)/DNA COMPLEX 47.70 48.50 63.70 96.70 109.60 106.30 PD0131 TYPE II RESTRICTION ENZYME ECORV P 1 Y (E.C.3.1.21.4)/DNA COMPLEX 47.90 48.60 63.90 96.90 108.90 106.80 -------------------------------------------------------------------------------- Page 7 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0132 TYPE II RESTRICTION ENZYME ECORV C 2 2 21 Y (E.C.3.1.21.4)/DNA COMPLEX 72.60 120.40 182.70 90.00 90.00 90.00 PD0133 TYPE II RESTRICTION ENZYME ECORV P 41 21 2 Y (E.C.3.1.21.4)/DNA COMPLEX 66.10 66.10 299.10 90.00 90.00 90.00 PD0134 REVERSE TRANSCRIPTASE (E.C.2.7.7.49)/DNA COMPLEX P 21 Y 65.87 63.59 73.40 90.00 102.91 90.00 PD0135 REVERSE TRANSCRIPTASE (E.C.2.7.7.49)/DNA COMPLEX P 21 Y 66.16 63.54 73.50 90.00 103.85 90.00 PD0139 TYPE II RESTRICTION ENZYME BAMH P 21 21 21 Y (E.C.3.1.21.4)/DNA COMPLEX 114.80 91.10 66.40 90.00 90.00 90.00 PD0140 I-PPOI HOMING ENDONUCLEASE/DNA COMPLEX C 2 Y 182.00 73.10 92.70 90.00 95.40 90.00 PD0141 3-METHYL-ADENINE DNA GLYCOSYLASE P 21 21 21 Y (E.C.3.2.2.21)/DNA COMPLEX 42.15 57.34 125.52 90.00 90.00 90.00 PD0147 TYPE II RESTRICTION ENZYME PVUII P 21 21 21 Y (E.C.3.1.21.4)/DNA COMPLEX 93.80 84.34 46.16 90.00 90.00 90.00 PD0149 TYPE II RESTRICTION ENZYME PVUII P 21 21 21 Y (E.C.3.1.21.4)/DNA COMPLEX 94.04 84.70 45.99 90.00 90.00 90.00 PD0150 RIBONUCLEASE A/DNA COMPLEX P 21 Y 83.57 96.34 48.24 90.00 107.50 90.00 -------------------------------------------------------------------------------- Page 8 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0151 RESTRICTION ENDONUCLEASE/DNA COMPLEX P 21 21 21 Y 58.40 72.47 121.67 90.00 90.00 90.00 PD0152 PROTEIN (MOLONEY MURINE LEUKEMIA VIRUS REVERSE P 21 21 2 Y TRANSCRIPTASE)/DNA COMPLEX 54.74 145.49 46.74 90.00 90.00 90.00 PD0153 RESTRICTION ENDONUCLEASE BGLI/DNA COMPLEX P 21 21 21 Y 48.80 101.70 116.90 90.00 90.00 90.00 PD0166 CRE RECOMBINASE/DNA COMPLEX I 2 3 Y 160.65 160.65 160.65 90.00 90.00 90.00 PD0168 3-METHYL-ADENINE DNA GLYCOSYLASE P 21 21 21 Y (E.C.3.2.2.20)/DNA COMPLEX 42.10 57.30 125.50 90.00 90.00 90.00 PD0172 3-METHYL-ADENINE DNA GLYCOSYLASE P 21 21 21 Y (E.C.3.2.2.20)/DNA COMPLEX 43.75 57.10 128.45 90.00 90.00 90.00 PD0177 TYPE II RESTRICTION ENZYME NGOMI P 21 21 21 Y (E.C.3.1.21.4)/DNA COMPLEX 90.40 91.13 149.52 90.00 90.00 90.00 PD0178 FLP RECOMBINASE/SYMMETRIZED FRT DNA COMPLEX P 21 Y 81.48 180.18 98.60 90.00 97.02 90.00 PD0179 8-OXOGUANINE DNA GLYCOSYLASE 1 (E.C.3.2.2.-)/DNA P 65 2 2 Y COMPLEX 92.11 92.11 211.01 90.00 90.00 120.00 PD0188 MODIFICATION METHYLASE TAQI (E.C.2.1.1.72)/DNA P 21 Y COMPLEX 59.50 68.65 114.43 90.00 92.20 90.00 -------------------------------------------------------------------------------- Page 9 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0189 DNA ENDONUCLEASE I-CREI (E.C. 3.1.-.-)/DNA COMPLEX P 21 Y 43.20 67.80 88.30 90.00 91.60 90.00 PD0190 DNA ENDONUCLEASE I-CREI (E.C. 3.1.-.-)/DNA COMPLEX P 21 Y 43.00 67.90 88.30 90.00 91.60 90.00 PD0194 HHAI METHYLTRANSFERASE MUTANT (T250G) (E.C. R 3 2 Y 2.1.1.73), DNA AND ADOHCY 98.46 98.46 323.22 90.00 90.00 120.00 PD0195 8-OXOGUANINE DNA GLYCOSYLASE 1 (E.C. 3.2.2.-)/DNA P 65 2 2 Y COMPLEX 91.99 91.99 211.62 90.00 90.00 120.00 PD0196 DNA POLYMERASE BETA/DNA COMPLEX P 21 Y 105.91 56.16 86.06 90.00 107.25 90.00 PD0197 DNA POLYMERASE BETA/DNA COMPLEX P 21 Y 105.78 56.13 85.41 90.00 106.94 90.00 PD0200 INTRON-ASSOCIATED ENDONUCLEASE 1/DNA Complex P 21 Y 55.14 65.21 43.67 90.00 93.10 90.00 PD0202 REVERSE TRANSCRIPTASE (E.C. 2.7.7.49)/DNA Complex P 21 21 2 Y 54.26 146.65 46.71 90.00 90.00 90.00 PD0203 DNA TOPOISOMERASE III (E.C. 5.99.1.2)/DNA Complex C 2 Y 122.01 60.83 125.36 90.00 90.73 90.00 PD0207 TYPE II RESTRICTION ENZYME NAEI (E.C. P 21 21 21 Y 3.1.21.4)/DNA Complex 59.60 65.00 258.50 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 10 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0212 DNA POLYMERASE/DNA Complex P 21 21 21 Y 80.79 118.60 128.00 90.00 90.00 90.00 PD0213 HIN RECOMBINASE/DNA COMPLEX C 2 2 21 Y 85.75 81.14 44.60 90.00 90.00 90.00 PD0216 P2 PROTEIN/DNA Complex P 21 Y 105.09 92.24 140.64 90.00 101.04 90.00 PD0217 P2 PROTEIN/DNA Complex P 21 Y 105.65 92.70 140.79 90.00 101.09 90.00 PD0220 Ku Heterodimer/DNA complex P 21 21 21 Y 83.92 126.31 126.44 90.00 90.00 90.00 PD0228 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 86.80 82.12 45.23 90.00 90.00 90.00 PD0229 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 66.33 68.69 62.14 90.00 90.00 90.00 PD0234 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 85.61 82.00 43.73 90.00 90.00 90.00 PD0235 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 85.36 81.54 45.39 90.00 90.00 90.00 PD0236 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 85.16 82.66 45.12 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 11 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0237 HIN RECOMBINASE/DNA Complex C 2 2 21 Y 86.09 82.71 44.87 90.00 90.00 90.00 PD0242 BARNASE (E.C.3.1.27.-)/DNA COMPLEX P 31 2 1 Y 57.97 57.97 85.37 90.00 90.00 120.00 PD0251 DNA POLYMERASE IV(FAMILY Y) (E.C. 2.7.7.7)/DNA P 21 21 2 Y Complex 97.09 102.82 52.30 90.00 90.00 90.00 PD0252 DNA POLYMERASE IV(FAMILY Y) (E.C. 2.7.7.7)/DNA P 21 21 2 Y Complex 97.12 101.88 52.45 90.00 90.00 90.00 PD0253 Endonuclease VIII (E.C.3.2.-.-)/DNA Complex P 43 2 2 Y 76.03 76.03 164.93 90.00 90.00 90.00 PD0254 ENDONUCLEASE VIII (E.C.3.2.-.-)/DNA Complex P 43 2 2 Y 76.50 76.50 164.31 90.00 90.00 90.00 PD0255 DNA TOPOISOMERASE I (E.C.5.99.1.2)/DNA Complex P 32 Y 73.23 73.23 186.63 90.00 90.00 120.00 PD0256 DNA TOPOISOMERASE I (E.C.5.99.1.2)/DNA Complex P 21 Y 57.09 116.26 75.22 90.00 94.16 90.00 PD0264 Formamidopyrimidine-DNA glycosylase P 21 Y (E.C.3.2.2.23)/DNA Complex 80.70 96.03 96.23 90.00 96.80 90.00 PD0267 RECG/DNA Complex C 2 Y 133.70 144.60 84.02 90.00 113.82 90.00 -------------------------------------------------------------------------------- Page 12 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0271 CRE RECOMBINASE/DNA Complex C 2 2 21 Y 107.17 121.60 179.31 90.00 90.00 90.00 PD0272 TYPE II RESTRICTION ENZYME HINCII I 21 21 21 Y (E.C.3.1.21.4)/DNA complex 67.12 177.67 256.36 90.00 90.00 90.00 PD0275 Terminal deoxynucleotidyltransferase short P 21 21 21 Y isoform (E.C.2.7.7.31)/DNA complex 46.80 85.00 111.40 90.00 90.00 90.00 PD0277 Formamido-pyrimidine DNA glycosylase P 21 Y (E.C.3.2.2.23)/DNA Complex 69.88 62.03 80.97 90.00 104.70 90.00 PD0292 MUTM/DNA Complex P 21 21 21 Y 44.98 95.32 103.94 90.00 90.00 90.00 PD0293 MutM/DNA Complex P 21 21 21 Y 45.02 96.05 103.89 90.00 90.00 90.00 PD0295 MutM/DNA Complex P 21 21 21 Y 45.22 95.00 103.55 90.00 90.00 90.00 PD0296 MutM/DNA Complex P 21 21 21 Y 44.91 94.49 104.38 90.00 90.00 90.00 PD0300 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 86.29 93.25 106.29 90.00 90.00 90.00 PD0301 DNA Polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.53 93.36 106.23 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 13 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0302 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 86.43 93.02 106.14 90.00 90.00 90.00 PD0303 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 88.07 93.38 104.92 90.00 90.00 90.00 PD0304 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.47 93.42 105.67 90.00 90.00 90.00 PD0305 RNA polymerase Holoenzyme/DNA P 43 2 2 Y 180.95 180.95 523.46 90.00 90.00 90.00 PD0306 CATABOLITE GENE ACTIVATOR PROTEIN/DNA-directed P 62 2 2 Y RNA polymerase alpha chain (E.C.2.7.7.6)/DNA Complex, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 175.97 175.97 158.02 90.00 90.00 120.00 PD0313 DNA topoisomerase I (E.C.5.99.1.2)/DNA Complex P 21 Y 57.20 122.50 72.00 90.00 97.40 90.00 PD0316 CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 P 32 1 2 Y REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER 169.18 169.18 221.91 90.00 90.00 120.00 PD0317 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 31 Y 91.68 91.68 190.12 90.00 90.00 120.00 PD0319 ENDONUCLEASE PI-SCEI/DNA Complex P 65 2 2 Y 123.00 123.00 211.70 90.00 90.00 120.00 PD0320 ENDONUCLEASE PI-SCEI/DNA Complex P 21 21 21 Y 45.20 87.40 214.80 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 14 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0321 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA P 65 2 2 Y Complex 92.00 92.00 211.43 90.00 90.00 120.00 PD0322 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA P 65 2 2 Y Complex 92.17 92.17 211.89 90.00 90.00 120.00 PD0323 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA P 65 2 2 Y complex 92.03 92.03 211.31 90.00 90.00 120.00 PD0327 Modification methylase HhaI/DNA Complex R 3 2 Y 96.19 96.19 315.75 90.00 90.00 120.00 PD0331 8-OXOGUANINE DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA P 65 2 2 Y Complex 92.34 92.34 211.34 90.00 90.00 120.00 PD0332 8-oxoguanine DNA glycosylase (E.C.3.2.2.-)/DNA P 65 2 2 Y Complex 92.42 92.42 211.43 90.00 90.00 120.00 PD0333 DNA beta-glucosyltransferase (E.C.2.4.1.27)/DNA P 21 Y Complex 78.90 56.40 99.10 90.00 90.30 90.00 PD0334 DNA beta-glucosyltransferase (E.C.2.4.1.27)//DNA P 21 Y Complex 83.00 55.90 99.50 90.00 91.10 90.00 PD0335 DNA endonuclease I-MsoI/DNA Complex P 1 Y 41.51 42.21 71.32 73.34 73.17 71.09 PD0336 FLP RECOMBINASE/DNA Complex P 21 Y 79.78 116.51 142.43 90.00 97.26 90.00 -------------------------------------------------------------------------------- Page 15 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0337 CRE RECOMBINASE/DNA Complex C 2 2 21 Y 107.54 122.24 180.03 90.00 90.00 90.00 PD0340 Tn5 transposase/DNA Complex P 65 2 2 Y 112.50 112.50 233.50 90.00 90.00 120.00 PD0342 chimera of homing endonuclease I-DmoI and DNA P 31 Y endonuclease I-CreI (E.C.3.1.-.-)/DNA 131.76 131.76 120.91 90.00 90.00 120.00 PD0343 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA Complex P 21 Y 55.20 81.00 55.60 90.00 106.10 90.00 PD0344 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA Complex P 21 Y 50.50 79.90 55.60 90.00 107.90 90.00 PD0345 DNA-directed RNA polymerase (E.C.2.7.7.6)/DNA/RNA C 2 2 21 Y Complex 142.91 145.46 145.60 90.00 90.00 90.00 PD0346 G/U mismatch-specific DNA glycosylase P 21 21 21 Y (E.C.3.2.2.2-)/DNA Complex 67.62 84.86 97.58 90.00 90.00 90.00 PD0347 TN5 TRANSPOSASE/DNA COMPLEX P 65 2 2 Y 113.70 113.70 228.10 90.00 90.00 120.00 PD0349 TN5 TRANSPOSASE/DNA Complex P 65 2 2 Y 112.40 112.40 232.80 90.00 90.00 120.00 PD0350 TN transposase/DNA Complex P 65 2 2 Y 112.70 112.70 235.90 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 16 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0353 G/U mismatch-specific DNA glycosylase (E.C.3.2.2.- P 42 21 2 Y )/DNA COMPLEX 101.35 101.35 45.01 90.00 90.00 90.00 PD0354 G/U mismatch-specific DNA glycosylase (E.C.3.2.2.- P 42 21 2 Y )/DNA COMPLEX 102.00 102.00 45.13 90.00 90.00 90.00 PD0358 DNA polymerase IV (E.C.2.7.7.7)/DNA P 21 21 21 Y 75.55 88.46 92.39 90.00 90.00 90.00 PD0359 Reverse Transcriptase (E.C.2.7.7.49)/DNA complex P 21 21 2 Y 54.41 146.22 46.78 90.00 90.00 90.00 PD0360 DNA endonuclease I-CreI (E.C.3.1.-.-)/DNA P 21 21 21 Y 46.73 68.44 301.49 90.00 90.00 90.00 PD0361 DNA endonuclease I-CreI (E.C.3.1.-.-)/DNA P 21 Y 78.32 76.39 81.06 90.00 108.75 90.00 PD0362 DNA polymerase IV(E.C.2.7.7.7)/DNA P 21 21 21 Y 98.02 102.36 105.66 90.00 90.00 90.00 PD0364 reverse transcriptase (E.C.2.7.7.49)/monoclonal P 32 1 2 Y antibody fab28 light and heavy chains/DNA 166.35 166.35 220.96 90.00 90.00 120.00 PD0365 reverse transcriptase (E.C.2.7.7.49)/monoclonal P 32 1 2 Y antibody fab28 light and heavy chains/DNA 166.70 166.70 221.12 90.00 90.00 120.00 PD0370 DNA topoisomerase I/DNA Complex P 32 Y 72.97 72.97 186.29 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 17 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0372 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.95 93.69 104.99 90.00 90.00 90.00 PD0373 DNA POLYMERASE I (E.C.2.7.7.7)/DNA COMPLEX P 21 21 21 Y 88.33 93.55 104.90 90.00 90.00 90.00 PD0374 DNA Polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 86.98 93.72 106.21 90.00 90.00 90.00 PD0375 DNA POLYMERASE I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.34 93.47 105.80 90.00 90.00 90.00 PD0376 DNA POLYMERASE I (E.C.2.7.7.7)/DNA complex P 21 21 21 Y 88.12 93.61 104.75 90.00 90.00 90.00 PD0377 DNA polymerase I (E.C.2.7.7.7)/DNA complex P 21 21 21 Y 87.89 93.67 105.34 90.00 90.00 90.00 PD0378 DNA polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.57 93.39 105.87 90.00 90.00 90.00 PD0379 DNA polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.86 93.68 105.45 90.00 90.00 90.00 PD0380 DNA polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.22 93.39 106.27 90.00 90.00 90.00 PD0381 DNA polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 87.72 93.58 105.28 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 18 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0382 DNA polymerase I (E.C.2.7.7.7)/DNA complex P 21 21 21 Y 87.39 93.42 105.70 90.00 90.00 90.00 PD0383 DNA polymerase I (E.C.2.7.7.7)/DNA complex P 21 21 21 Y 88.24 93.70 105.44 90.00 90.00 90.00 PD0384 DNA polymerase I (E.C.2.7.7.7)/DNA complex P 21 21 21 Y 87.80 93.49 105.47 90.00 90.00 90.00 PD0385 DNA polymerase I (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 88.29 94.32 105.69 90.00 90.00 90.00 PD0391 tyrosyl-DNA phosphodiesterase 1/DNA Complex P 21 21 21 Y 49.80 104.72 193.92 90.00 90.00 90.00 PD0392 Cre recombinase/DNA COMPLEX P 21 21 21 Y 108.89 163.53 195.79 90.00 90.00 90.00 PD0394 TrwC protein/DNA Complex P 61 2 2 Y 90.83 90.83 203.63 90.00 90.00 120.00 PD0396 ENDONUCLEASE III/DNA P 21 21 2 Y 67.83 106.83 41.71 90.00 90.00 90.00 PD0397 ENDONUCLEASE III/DNA P 21 21 2 Y 67.73 106.52 41.66 90.00 90.00 90.00 PD0402 TRWC PROTEIN/DNA Complex P 65 Y 147.78 147.78 78.68 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 19 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0403 Nuclease (E.C.3.1.-.-) P 21 Y 53.74 50.11 89.61 90.00 97.53 90.00 PD0404 Cre recombinase/DNA COMPLEX P 21 21 21 Y 109.50 165.60 193.70 90.00 90.00 90.00 PD0427 Endonuclease III/5'- P 21 21 2 Y D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3'/5'- D(*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3' 66.32 105.90 41.52 90.00 90.00 90.00 PD0428 Lambda Integrase/DNA Complex P 21 Y 59.02 106.16 73.17 90.00 92.10 90.00 PD0433 Intron-encoded endonuclease I-AniI/DNA P 21 Y 60.46 72.84 65.23 90.00 108.21 90.00 PD0454 Colicin E7 (E.C.3.1.-.-)/DNA Complex P 21 Y 59.43 46.47 78.45 90.00 90.39 90.00 PD0460 DNA adenine methylase (E.C.2.1.1.72)/DNA Complex P 21 Y 39.70 109.70 73.60 90.00 104.20 90.00 PD0461 Uracil-DNA glycosylase(E.C.3.2.2.-)/DNA Complex P 21 21 21 Y 48.64 65.89 99.41 90.00 90.00 90.00 PD0462 Cre recombinase/DNA COMPLEX P 21 21 21 Y 107.99 161.06 196.00 90.00 90.00 90.00 PD0463 Cre recombinase/DNA COMPLEX P 21 21 21 Y 108.94 164.16 194.76 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 20 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0467 trwC PROTEIN/DNA Complex P 61 2 2 Y 91.19 91.19 205.03 90.00 90.00 120.00 PD0473 MutM/DNA Complex P 21 21 21 Y 44.29 93.63 102.22 90.00 90.00 90.00 PD0474 MutM/DNA Complex P 21 21 21 Y 44.59 94.23 102.18 90.00 90.00 90.00 PD0477 DNA topoisomerase I (E.C.5.99.1.2)/DNA Complex P 21 Y 56.94 118.64 71.65 90.00 98.33 90.00 PD0485 Tyrosyl-DNA phosphodiesterase 1 (E.C.3.1.4.- P 21 21 21 Y )/Topoisomerase I-Derived peptide/DNA Complex 50.08 104.90 193.83 90.00 90.00 90.00 PD0486 Tyrosyl-DNA Phosphodiesterase (E.C.3.1.4.- P 21 21 21 Y )/Topoisomerase I-Derived Peptide/DNA complex 49.82 104.83 193.54 90.00 90.00 90.00 PD0487 Tyrosyl-DNA Phosphodiesterase 1 (E.C.3.1.4.-)/DNA P 21 21 21 Y complex 49.80 104.71 193.75 90.00 90.00 90.00 PD0488 Tyrosyl-DNA Phosphodiesterase 1 (E.C.3.1.4.-)/DNA P 21 21 21 Y complex 49.81 104.69 193.31 90.00 90.00 90.00 PD0489 Tyrosyl-DNA Phosphodiesterase 1 (E.C.3.1.4.-)/DNA P 21 21 21 Y complex 49.79 104.89 194.12 90.00 90.00 90.00 PD0490 Tyrosyl-DNA Phosphodiesterase 1 (E.C.3.1.4.-)/DNA P 21 21 21 Y complex 49.72 104.56 193.18 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 21 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0491 Tyrosyl-DNA Phosphodiesterase 1 (E.C.3.1.4.-)/DNA P 21 21 21 Y complex 49.69 104.75 194.03 90.00 90.00 90.00 PD0493 Polynucleotide kinase/DNA I 2 2 2 Y 82.17 92.06 123.39 90.00 90.00 90.00 PD0499 Polynucleotide kinase (E.C.2.7.1.78)/DNA Complex I 2 2 2 Y 80.56 92.63 122.67 90.00 90.00 90.00 PD0500 Polynucleotide kinase (E.C.2.7.1.78)/DNA Complex I 2 2 2 Y 81.13 92.98 124.14 90.00 90.00 90.00 PD0501 Flap structure-specific endonuclease/5'- P 41 21 2 Y d(*T*pA*pG*pC*pA*pT*pC*pG*pG) 86.84 86.84 250.52 90.00 90.00 90.00 PD0502 5'-d(*C*pG*pA*pT*pG*pC*pT*pA)-3'/5'- P 21 21 2 Y d(*T*pA*pG*pC*pA*pT*pC*pG*pG)-3'/Flap structure- specific endonuclease 109.33 86.48 43.86 90.00 90.00 90.00 PD0503 NA polymerase lambda (E.C.2.7.7.7)/DNA Complex P 21 21 2 Y 191.32 99.03 104.84 90.00 90.00 90.00 PD0504 DNA polymerase IV (E.C.2.7.7.7)/DNA Complex P 21 21 2 Y 98.52 101.56 52.25 90.00 90.00 90.00 PD0505 DNA polymerase IV (E.C.2.7.7.7)/DNA Complex P 21 21 21 Y 98.73 102.29 106.07 90.00 90.00 90.00 PDE001 ECO RI ENDONUCLEASE (E.C.3.1.21.4)/DNA COMPLEX P 3 2 1 Y 118.40 118.40 49.70 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 22 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE002 ECO RV (E.C.3.1.21.4)/DNA COMPLEX P 21 Y 68.50 79.60 66.40 90.00 104.60 90.00 PDE003 ECO RV (E.C.3.1.21.4)/DNA COMPLEX C 2 2 21 Y 60.20 78.40 371.30 90.00 90.00 90.00 PDE004 DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) P 43 Y MUTANT/DNA COMPLEX 104.30 104.30 86.00 90.00 90.00 90.00 PDE005 DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1)/DNA P 21 21 2 Y COMPLEX + N-ACETYL-D-GLUCOSAMINE 51.10 108.40 62.10 90.00 90.00 90.00 PDE006 DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1)/DNA C 2 2 21 Y COMPLEX + N-ACETYL-D-GLUCOSAMINE 72.90 100.10 92.60 90.00 90.00 90.00 PDE009 HIN RECOMBINASE/DNA COMPLEX C 2 2 21 Y 84.92 81.37 44.04 90.00 90.00 90.00 PDE010 BARNASE (E.C.3.1.27.-)/DNA COMPLEX P 1 Y 39.87 54.29 29.61 107.77 89.05 96.37 PDE0100 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR 178.54 57.73 48.47 90.00 90.00 90.00 PDE0101 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 178.63 57.76 48.49 90.00 90.00 90.00 PDE0102 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, NO P 21 21 2 Y 5'-PHOSPHATE 178.70 57.87 48.56 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 23 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE0103 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 178.90 57.69 48.43 90.00 90.00 90.00 PDE0104 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DTTP AND MGCL2 178.63 57.71 48.50 90.00 90.00 90.00 PDE0105 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MGCL2 178.66 57.82 48.49 90.00 90.00 90.00 PDE0106 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND MNCL2 178.68 57.70 48.48 90.00 90.00 90.00 PDE0107 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 178.60 57.64 48.46 90.00 90.00 90.00 PDE0108 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 178.87 57.67 48.48 90.00 90.00 90.00 PDE0109 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 178.54 57.72 48.51 90.00 90.00 90.00 PDE011 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 61 Y 2'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE 94.90 94.90 117.60 90.00 90.00 120.00 PDE0110 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 178.86 57.68 48.45 90.00 90.00 90.00 PDE0111 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 179.97 57.63 48.33 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 24 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE0112 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y NATIVE STRUCTURE 178.64 57.85 48.49 90.00 90.00 90.00 PDE0113 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7)/DNA P 21 21 2 Y COMPLEX (NON GAPPED DNA ONLY) 179.01 57.73 48.51 90.00 90.00 90.00 PDE0114 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX P 21 21 2 Y 180.83 57.65 48.17 90.00 90.00 90.00 PDE0115 GAMMA DELTA RESOLVASE/DNA COMPLEX P 21 21 21 Y 113.00 157.00 37.20 90.00 90.00 90.00 PDE0116 RIBONUCLEASE A (E.C.3.1.27.5)/DNA COMPLEX P 21 21 21 Y 44.90 75.00 43.60 90.00 90.00 90.00 PDE0117 RIBONUCLEASE A (E.C.3.1.27.5)/DNA COMPLEX P 21 21 21 Y 71.86 43.20 43.83 90.00 90.00 90.00 PDE012 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 Y 2',3'-DIDEOXYCYTIDINE-5'- TRIPHOSPHATE 106.30 56.80 86.70 90.00 106.40 90.00 PDE0121 URACIL-DNA GLYCOSYLASE (E.C.2.1.1.73)/DNA COMPLEX R 3 2 Y + S-ADENOSYL-L-HOMOCYSTEINE 99.86 99.86 325.20 90.00 90.00 120.00 PDE0124 DNA POLYMERASE BETA/DNA COMPLEX P 21 Y 53.53 78.66 54.62 90.00 107.54 90.00 PDE0125 DNA POLYMERASE BETA/DNA COMPLEX + 2',3'- P 21 Y DIDEOXYCYTIDINE-5'-TRIPHOSPHATE 50.54 79.82 54.94 90.00 107.11 90.00 -------------------------------------------------------------------------------- Page 25 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE0126 DNA POLYMERASE BETA/DNA COMPLEX (EC 2.7.7.7) P 21 Y 52.77 79.39 54.62 90.00 106.35 90.00 PDE0127 FOKI RESTRICTION ENDONUCLEASE/DNA COMPLEX P 21 Y 65.59 119.34 71.52 90.00 101.42 90.00 PDE0128 TC3 TRANSPOSASE/DNA COMPLEX C 2 2 21 Y 37.18 202.79 62.14 90.00 90.00 90.00 PDE0129 REP HELICASE/DNA COMPLEX (E.C.3.6.1.-) P 43 21 2 Y 141.80 141.80 284.80 90.00 90.00 90.00 PDE013 ALPHA-THROMBIN (E.C.3.4.21.5)/DNA, PPACK PEPTIDE P 21 21 21 Y 56.52 77.44 99.52 90.00 90.00 90.00 PDE0131 DNA POLYMERASE I/DNA COMPLEX P 21 21 21 Y 86.24 93.28 106.37 90.00 90.00 90.00 PDE0132 DNA POLYMERASE I/DNA COMPLEX P 21 21 21 Y 87.06 93.55 106.25 90.00 90.00 90.00 PDE0133 DNA POLYMERASE I/DNA COMPLEX P 21 21 21 Y 86.24 93.28 106.37 90.00 90.00 90.00 PDE0134 NS3 PROTEIN/DNA COMPLEX P 21 21 2 Y 73.10 117.50 63.40 90.00 90.00 90.00 PDE0135 DNA POLYMERASE, THIOREDOXIN/DNA COMPLEX, 2'- P 21 21 2 Y 3'DIDEOXYGUANOSINE-5'-TRIPHOSPHATE 106.60 216.30 52.10 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 26 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE0136 DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) P 43 Y MUTANT/DNA COMPLEX 101.56 101.56 85.25 90.00 90.00 90.00 PDE0137 DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) P 43 Y MUTANT/DNA COMPLEX 101.70 101.70 85.80 90.00 90.00 90.00 PDE0138 DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) P 43 Y MUTANT/DNA COMPLEX 101.60 101.60 85.20 90.00 90.00 90.00 PDE0139 ECORV ENDONUCLEASE(T93A)/DNA COMPLEX P 1 Y 50.00 64.40 49.20 109.20 108.70 95.80 PDE014 ECO RV (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 49.44 50.15 63.95 96.54 109.05 108.11 PDE0140 MISMATCH SPECIFIC URACIL DNA GLYCOSYLASE P 42 21 2 N (MUG)/DNA COMPLEX 101.35 45.00 45.00 90.00 90.00 90.00 PDE0141 TOPOISOMERASE I/DNA COMPLEX P 21 Y 56.50 118.40 71.50 90.00 101.20 90.00 PDE0142 TOPOISOMERASE I (E.C.5.99.1.2)/DNA COMPLEX P 21 Y 72.00 66.60 71.80 90.00 98.30 90.00 PDE0143 HUMAN TOPOISOMERASE I/DNA COMPLEX P 21 Y 71.80 66.30 71.80 90.00 98.40 90.00 PDE0144 INTRON-ENCODED ENDONUCLEASE I-PPOI/DNA COMPLEX P 31 2 1 Y 113.90 113.90 88.50 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 27 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE0145 ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 50.30 64.00 49.10 109.10 108.10 96.50 PDE0146 ENDONUCLEASE ECORV (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 50.30 64.20 49.40 109.30 108.30 96.30 PDE015 ECO RV (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 49.16 50.42 64.06 96.35 108.85 108.45 PDE016 ECO RV (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 49.29 50.34 63.88 96.66 108.76 108.41 PDE017 PVUII (E.C.3.1.21.4)/DNA COMPLEX P 21 21 21 Y 95.80 86.30 48.50 90.00 90.00 90.00 PDE020 BAMHI (E.C.3.1.21.4)/DNA COMPLEX P 21 21 21 Y 108.80 81.90 68.80 90.00 90.00 90.00 PDE022 T4 ENDONUCLEASE V (E.C.3.1.25.1) MUTANT/DNA P 65 Y COMPLEX 118.82 118.82 36.28 90.00 90.00 120.00 PDE023 RIBONUCLEASE B (E.C.3.1.27.5)/DNA COMPLEX P 41 21 2 Y 44.45 44.45 156.50 90.00 90.00 90.00 PDE024 TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE P 31 2 1 Y COMPLEX 107.60 107.60 170.01 90.00 90.00 120.00 PDE026 URACIL-DNA GLYCOSYLASE (E.C.3.2.2.-)/DNA COMPLEX P 21 21 21 Y 46.66 61.83 86.67 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 28 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE027 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF KCL AT PH 7.5 178.38 57.90 48.43 90.00 90.00 90.00 PDE028 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF BACL2 177.89 57.87 48.14 90.00 90.00 90.00 PDE029 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CACL2 178.06 57.64 48.14 90.00 90.00 90.00 PDE030 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CACL2 178.56 57.83 47.99 90.00 90.00 90.00 PDE031 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CRCL3 178.98 57.46 47.70 90.00 90.00 90.00 PDE032 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CSCL 178.89 57.77 48.40 90.00 90.00 90.00 PDE033 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 6.5 179.04 57.69 48.33 90.00 90.00 90.00 PDE034 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 7.5 178.01 58.50 48.70 90.00 90.00 90.00 PDE035 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF KCL 178.50 57.81 48.36 90.00 90.00 90.00 PDE036 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CACL2 AND MGCL2 178.05 57.63 48.18 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 29 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE037 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF KCL AND MGCL2 178.74 57.76 48.22 90.00 90.00 90.00 PDE038 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 AND MGCL2 178.51 57.73 48.03 90.00 90.00 90.00 PDE039 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 178.88 57.63 48.08 90.00 90.00 90.00 PDE040 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF BACL2 AND NACL 177.84 57.67 47.99 90.00 90.00 90.00 PDE041 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CACL2 AND NACL 178.69 57.74 48.17 90.00 90.00 90.00 PDE042 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF KCL AND NACL 178.11 57.71 48.17 90.00 90.00 90.00 PDE043 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 AND NACL 180.06 57.37 47.79 90.00 90.00 90.00 PDE044 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF NICL2 179.69 57.50 47.92 90.00 90.00 90.00 PDE045 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF TLCL 178.43 57.72 48.31 90.00 90.00 90.00 PDE046 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DATP AND ZNCL2 178.56 57.37 47.86 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 30 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE047 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX P 21 21 2 Y 178.47 57.80 48.44 90.00 90.00 90.00 PDE048 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CDCL2 177.18 57.71 48.52 90.00 90.00 90.00 PDE049 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CDCL2 178.46 57.77 48.53 90.00 90.00 90.00 PDE050 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF COCL2 178.57 57.76 48.48 90.00 90.00 90.00 PDE051 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CRCL3 178.54 57.71 48.49 90.00 90.00 90.00 PDE052 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CUCL2 177.01 57.75 48.58 90.00 90.00 90.00 PDE053 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MGCL2 178.56 57.74 48.47 90.00 90.00 90.00 PDE054 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 178.39 57.76 48.48 90.00 90.00 90.00 PDE055 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 178.47 57.76 48.51 90.00 90.00 90.00 PDE056 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF NICL2 178.57 57.75 48.51 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 31 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE057 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 179.14 57.53 48.49 90.00 90.00 90.00 PDE058 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 178.81 57.74 48.52 90.00 90.00 90.00 PDE059 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 178.94 57.80 48.49 90.00 90.00 90.00 PDE060 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 179.28 57.74 48.48 90.00 90.00 90.00 PDE061 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 178.51 57.73 48.52 90.00 90.00 90.00 PDE062 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2 178.78 57.74 48.48 90.00 90.00 90.00 PDE063 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF CDCL2 177.49 57.68 48.51 90.00 90.00 90.00 PDE064 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR 178.63 57.77 48.08 90.00 90.00 90.00 PDE065 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, NO P 21 21 2 Y 5'-PHOSPHATE 179.62 57.78 48.36 90.00 90.00 90.00 PDE066 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CDCL2 178.26 57.76 48.26 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 32 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE067 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND MGCL2 178.88 57.71 48.38 90.00 90.00 90.00 PDE068 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DATP AND MGCL2 178.80 57.73 48.29 90.00 90.00 90.00 PDE069 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DCTP AND MGCL2 178.82 57.77 48.30 90.00 90.00 90.00 PDE070 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DGTP AND MGCL2 179.22 57.69 48.23 90.00 90.00 90.00 PDE071 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 178.89 57.76 48.29 90.00 90.00 90.00 PDE072 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP, MGCL2, AND MNCL2 179.49 57.64 48.19 90.00 90.00 90.00 PDE073 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND NICL2 178.72 57.78 48.38 90.00 90.00 90.00 PDE074 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DATP, MNCL2, AND AMMONIUM SULFATE 178.81 57.78 48.52 90.00 90.00 90.00 PDE075 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y ADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF ATP AND MNCL2 179.37 57.83 48.23 90.00 90.00 90.00 PDE076 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF AZT-TP AND MNCL2 179.69 57.63 48.28 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 33 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE077 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND MNCL2 179.95 57.63 48.22 90.00 90.00 90.00 PDE078 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF OF DATP AND MNCL2 178.68 57.69 48.40 90.00 90.00 90.00 PDE079 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND MNCL2 179.61 57.63 48.28 90.00 90.00 90.00 PDE080 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 178.79 57.62 48.42 90.00 90.00 90.00 PDE081 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 179.89 57.59 48.18 90.00 90.00 90.00 PDE082 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDATP AND MNCL2 179.67 57.59 48.14 90.00 90.00 90.00 PDE083 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 179.02 57.63 48.28 90.00 90.00 90.00 PDE084 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 180.05 57.72 48.27 90.00 90.00 90.00 PDE085 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 179.69 57.67 48.13 90.00 90.00 90.00 PDE086 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 179.79 57.62 48.19 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 34 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE087 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF OF DATP, MNCL2, AND LITHIUM SULFATE 178.58 57.74 48.47 90.00 90.00 90.00 PDE088 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF MNCL2 AND IN THE ABSENCE OF NACL 178.42 57.70 48.48 90.00 90.00 90.00 PDE089 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CACL2 179.84 57.72 48.17 90.00 90.00 90.00 PDE090 DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX P 21 21 2 Y 114.70 109.66 70.27 90.00 90.00 90.00 PDE091 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2 178.48 57.75 48.51 90.00 90.00 90.00 PDE092 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 178.88 57.71 48.42 90.00 90.00 90.00 PDE093 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 179.30 57.60 48.01 90.00 90.00 90.00 PDE094 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DATP AND CUCL2 178.84 57.87 48.62 90.00 90.00 90.00 PDE095 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 179.96 57.62 48.38 90.00 90.00 90.00 PDE096 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND ZNCL2 179.89 57.60 48.43 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 35 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDE097 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + P 21 21 2 Y 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND ZNCL2 179.22 57.68 48.50 90.00 90.00 90.00 PDE098 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, P 21 21 2 Y SOAKED IN THE PRESENCE OF DTTP AND ZNCL2 180.93 57.54 48.22 90.00 90.00 90.00 PDE099 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX P 21 21 2 Y 179.76 57.73 48.38 90.00 90.00 90.00 PDE139 ECORV ENDONUCLEASE (E.C.3.1.21.4)/DNA COMPLEX P 1 Y 49.00 50.20 64.10 109.00 108.00 96.00 PDE140 I-PPOL HOMING ENDONUCLEASE/DNA COMPLEX P 31 2 1 Y 113.40 113.40 88.20 90.00 90.00 120.00 PDE141 CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI R 3 2 Y (E.C.2.1.1.73)/DNA COMPLEX 99.86 99.86 325.20 90.00 90.00 120.00 PDEB08 HHAI METHYLTRANSFERASE (E.C.2.1.1.73)/DNA COMPLEX R 3 2 Y + S-ADENOSYL-L-HOMOSYTEINE 99.86 99.86 325.20 90.00 90.00 120.00 PDEB122 HHAI METHYLTRANSFERASE (E.C.2.1.1.73)/DNA COMPLEX R 3 2 Y + S-ADENOSYL-L-HOMOSYTEINE 99.86 99.86 325.20 90.00 90.00 120.00 PDEB123 HHAI METHYLTRANSFERASE (E.C.2.1.1.7)/DNA COMPLEX R 3 2 Y + S-ADENOSYL-L-HOMOCYSTEINE 99.86 99.86 325.20 90.00 90.00 120.00 PDEB19 AEIII METHYLASE (E.C.2.1.1.37)/DNA COMPLEX P 21 21 21 Y 57.57 108.04 155.79 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 36 created by the NDB Project on Wed May 26 14:22:54 2004 CELL DIMENSIONS FOR PROTEIN/DNA (ENZYMES) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PH0001 DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE P 4 21 2 Y (ADAR1)/DNA COMPLEX 85.90 85.90 71.30 90.00 90.00 90.00 PH0002 BACTERIOPHAGE T7 RNA POLYMERASE (E.C.2.7.7.6)/DNA P 21 21 2 Y COMPLEX 221.20 73.60 80.90 90.00 90.00 90.00 PH0003 HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB P 32 1 2 Y 28//DNA/RNA Complex 166.16 166.16 218.81 90.00 90.00 120.00 PH0004 RNA POLYMERASE II/DNA/RNA Complex C 2 Y 157.30 220.70 191.30 90.00 97.50 90.00 PH0008 T7 RNA polymerase(E.C.2.7.7.6)/DNA/RNA Complex P 1 Y 81.13 87.70 206.53 91.93 91.02 110.66 PH0011 DNA-directed RNA polymerase II largest subunit C 2 Y (E.C.2.7.7.6)/DNA-directed RNA polymerase II 140 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerase II 45 kDa polypeptide (E.C.2.7.7.6)/DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (E 167.08 221.26 193.69 90.00 100.10 90.00 PR0016 DNA POLYMERASE I (E.C.2.7.7.7 )/DNA-RNA COMPLEX P 43 Y 102.55 102.55 86.28 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 37 created by the NDB Project on Wed May 26 14:22:54 2004