CELL DIMENSIONS FOR DNA/RNA HYBRIDS -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- AH0001 5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3' 5'- P 21 21 21 Y D(*GP*CP*TP*TP*CP*TP*CP*TP*TP*C)-3' 25.72 45.55 47.81 90.00 90.00 90.00 AH0005 5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3', 5'- P 61 Y R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3' 49.15 49.15 46.13 90.00 90.00 120.00 AH0007 5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3' P 21 21 21 Y 24.20 42.66 49.31 90.00 90.00 90.00 AH0008 5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3' P 21 21 21 Y 25.54 43.73 45.47 90.00 90.00 90.00 AH0009 5'-R(*GP)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3' P 21 21 21 Y 26.19 41.94 43.32 90.00 90.00 90.00 AH0010 5'-D(*CP*TP*CP*CP*TP*CP*TP*TP*C)-3', 5'- I 2 2 2 Y R(*GP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3' 46.66 47.61 54.04 90.00 90.00 90.00 AH0011 5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3' P 21 21 21 Y 23.90 45.76 49.27 90.00 90.00 90.00 AH0012 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'- P 21 21 21 Y D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' 25.70 41.07 46.11 90.00 90.00 90.00 AH0013 5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3' P 21 21 21 Y 27.69 47.71 113.62 90.00 90.00 90.00 AH0014 5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3' P 21 21 21 Y 30.53 45.22 162.02 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:22:49 2004 CELL DIMENSIONS FOR DNA/RNA HYBRIDS -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- AH0015 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(FLO)U)-3' C 2 Y 53.75 19.40 45.84 90.00 105.70 90.00 AH0016 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(FLO)U)-3' C 2 Y 53.73 19.39 45.83 90.00 105.70 90.00 AH0017 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(CLO)U)-3' C 2 Y 53.82 19.38 50.30 90.00 109.90 90.00 AH0018 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(BRO)U)-3' C 2 Y 53.80 19.40 50.31 90.00 109.90 90.00 AH0019 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', 5'- I 2 2 2 Y D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' 45.23 46.78 56.56 90.00 90.00 90.00 AHH0114 5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3', 5'- P 21 21 21 Y R(*GP*CP*CP*AP)-D(*CP*TP*GP*C)-3' 42.74 44.15 51.93 90.00 90.00 90.00 AHH071 5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3' R 3 Y 43.10 43.10 59.40 90.00 90.00 120.00 AHH077 5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3' R 3 Y 39.71 39.71 68.15 90.00 90.00 120.00 AHH089 5'-R(*GP*UP*GP*UP*GP*UP*AP*)-D(*C)-3' R 3 Y 40.82 40.82 66.09 90.00 90.00 120.00 AHIB53 5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BR)U)-3' C 2 Y 53.80 19.40 50.14 90.00 109.90 90.00 -------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:22:49 2004 CELL DIMENSIONS FOR DNA/RNA HYBRIDS -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- AHJ015 5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*GP*C)-3' P 21 21 21 Y 24.20 43.46 49.40 90.00 90.00 90.00 AHJ040 5'-D(*GP*GP*GP*TP*AP*TP*AP*CP*GP*C)-3'/ 5'- P 21 21 21 Y R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*CP*C)-3' 24.03 43.67 48.95 90.00 90.00 90.00 AHJ043 5'-R(*GP*)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3' P 21 21 21 Y 27.50 44.23 44.61 90.00 90.00 90.00 AHJ044 5'-D(*GP*CP*GP*TP*)-R(*AP*)-D(*TP*AP*CP*GP*C)-3' P 21 21 21 Y 25.25 45.73 45.83 90.00 90.00 90.00 AHJ052 5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3' P 21 21 21 Y 26.63 45.24 47.99 90.00 90.00 90.00 AHJ060 5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3' P 21 21 21 Y 23.98 40.77 44.84 90.00 90.00 90.00 AHJ068 5'-R(*GP*CP*)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3', P 21 21 21 Y [CO(NH3)6]3+ 25.24 44.56 45.30 90.00 90.00 90.00 AHJS55 5'-D(*GP*CP*GP*TP*)-(CH3)R(*AP*)- P 21 21 21 Y D(*TP*AP*CP*GP*C)-3' 25.13 45.65 47.55 90.00 90.00 90.00 AR0019 5'-R(*CP*GP*UP*GP*AP*UP*CP*GP)-D(*C)-3' R 3 Y 39.96 39.96 67.44 90.00 90.00 120.00 DR0001 5'-R(*GP*UP*GP*CP*AP*CP*A)-D(P*C)-3' I 21 21 21 Y 24.29 45.25 73.68 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:22:49 2004 CELL DIMENSIONS FOR DNA/RNA HYBRIDS -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- DR0002 5'-R(*GP*UP*AP*UP*AP*CP*A)-D(P*C)-3' P 21 21 21 Y 24.19 45.53 74.20 90.00 90.00 90.00 DR0003 5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'- P 61 Y R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3' 48.08 48.08 42.88 90.00 90.00 120.00 GHHB34 5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3', P 41 2 2 Y DISTAMYCIN A 27.92 27.92 57.70 90.00 90.00 90.00 GHHB35 5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)- P 41 2 2 Y 3', DISTAMYCIN A 27.93 27.93 57.47 90.00 90.00 90.00 UH0001 RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME P 61 2 2 Y 63.45 63.45 216.51 90.00 90.00 120.00 UH0002 10-23 DNA ENZYME BOUND TO RNA SUBSTRATE I 2 2 2 Y 62.81 114.26 171.45 90.00 90.00 90.00 UH0005 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'/5'- P 21 21 21 Y D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' 25.70 41.07 46.12 90.00 90.00 90.00 UH0006 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'/5'- P 21 21 21 Y D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' 25.59 40.76 45.74 90.00 90.00 90.00 UHJ055 5'-R(*UP*UP*CP*GP*GP*GP*CP*GP*CP*C)-3'/5'- P 43 2 2 Y D(*GP*GP*CP*GP*CP*CP*CP*GP*AP*A)-3' 31.30 31.30 137.70 90.00 90.00 90.00 UHJ073 5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3' P 21 21 21 Y 24.52 44.85 47.58 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:22:49 2004 CELL DIMENSIONS FOR DNA/RNA HYBRIDS -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- UHJ074 5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3' P 21 21 21 Y 25.65 45.53 47.93 90.00 90.00 90.00 UHK045 5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)- P 65 2 2 Y 3', HEXAGONAL 27.25 27.25 177.40 90.00 90.00 120.00 UHK046 5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)- C 2 2 21 Y 3', ORTHORHOMBIC 25.89 33.97 57.56 90.00 90.00 90.00 ZHF026 5'-D(*CP*GP*)-R(*CP*GP*)-D(*CP*G)-3' P 21 21 21 n.a. 18.25 30.93 43.05 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:22:49 2004