CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0004 DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA P 41 Y OPERATOR COMPLEX 117.05 117.05 145.34 90.00 90.00 90.00 PD0007 ANTENNAPEDIA HOMEODOMAIN (MUTANT C39S)/DNA COMPLEX P 2 2 21 Y 61.05 77.75 94.42 90.00 90.00 90.00 PD0008 REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX P 1 Y 38.67 45.69 47.95 75.16 80.64 85.58 PD0016 ENGRAILED HOMEODOMAIN/DNA COMPLEX C 2 Y 130.62 45.52 72.93 90.00 118.32 90.00 PD0020 SAP-1 ETS DOMAIN/DNA COMPLEX P 21 Y 31.59 55.67 44.23 90.00 107.16 90.00 PD0022 CRO REPRESSOR/DNA COMPLEX C 2 Y 45.72 60.66 45.72 90.00 112.70 90.00 PD0024 EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX P 21 21 21 Y 60.08 64.50 111.94 90.00 90.00 90.00 PD0025 ARC FV10 REPRESSOR/DNA COMPLEX P 21 Y 62.84 56.31 52.98 90.00 105.03 90.00 PD0027 ERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP- P 21 Y 1)/DNA COMPLEX 34.50 62.31 38.87 90.00 107.17 90.00 PD0028 TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX I 41 Y 174.00 174.00 79.40 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0035 WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX P 21 Y 62.13 56.41 52.33 90.00 104.14 90.00 PD0042 ULTRABITHORAX HOMEOTIC PROTEIN IV/HOMEOBOX P 43 21 2 Y PROTEIN EXTRADENTICLE/DNA COMPLEX 69.43 69.43 100.70 90.00 90.00 90.00 PD0045 TRANSCRIPTION FACTOR E2F-4 DP-2/DNA TERNARY P 31 2 1 Y COMPLEX 101.30 101.30 73.50 90.00 90.00 120.00 PD0046 ORPHAN NUCLEAR RECEPTOR NGFI-B/DNA COMPLEX P 21 Y 53.42 34.24 56.26 90.00 109.13 90.00 PD0050 HOMEOBOX PROTEIN PAX-6/DNA COMPLEX P 21 21 21 Y 33.84 61.69 171.11 90.00 90.00 90.00 PD0051 HIGH MOBILITY GROUP PROTEIN HMG1/DNA COMPLEX C 2 Y 105.21 50.41 53.13 90.00 99.82 90.00 PD0056 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA COMPLEX C 2 2 21 Y 176.34 95.18 81.64 90.00 90.00 90.00 PD0057 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA COMPLEX C 2 2 21 Y 176.47 95.02 81.05 90.00 90.00 90.00 PD0058 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA C 2 2 21 Y COMPLEX, HYPOXANTHINE 176.48 95.26 81.18 90.00 90.00 90.00 PD0059 PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE C 2 2 21 Y 176.67 95.49 80.30 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0060 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA COMPLEX C 2 2 21 Y 176.23 95.78 80.37 90.00 90.00 90.00 PD0061 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA COMPLEX C 2 2 21 Y 176.62 95.61 80.28 90.00 90.00 90.00 PD0069 DIPHTHERIA TOXIN REPRESSOR/DNA COMPLEX P 42 2 2 Y 180.20 180.20 151.00 90.00 90.00 90.00 PD0070 TATA-BINDING PROTEIN/TRANSCRIPTION INITIATION I 21 3 Y FACTOR IIB/DNA COMPLEX 174.20 174.20 174.20 90.00 90.00 90.00 PD0071 PROTEIN RETINOIC ACID RECEPTOR RXR-ALPHA/DNA P 21 Y COMPLEX 70.93 33.65 101.40 90.00 89.95 90.00 PD0073 HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX C 2 Y 62.69 54.90 41.06 90.00 122.44 90.00 PD0075 PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX P 21 21 21 Y 58.67 64.58 81.91 90.00 90.00 90.00 PD0076 INTERFERON REGULATORY FACTOR 2/DNA COMPLEX P 65 2 2 Y 132.30 132.30 296.50 90.00 90.00 120.00 PD0078 ROB TRANSCRIPTION FACTOR/DNA COMPLEX P 21 Y 75.38 208.01 67.73 90.00 90.00 90.00 PD0088 PROTEIN (CHROMOSOMAL PROTEIN SSO7D)/DNA COMPLEX P 21 21 21 Y 46.87 49.67 37.65 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0089 PROTEIN (HEME ACTIVATOR PROTEIN)/DNA COMPLEX P 21 21 21 Y 85.60 85.70 94.00 90.00 90.00 90.00 PD0090 HEME ACTIVATOR PROTEIN HAP1-18/DNA COMPLEX P 41 21 2 Y 92.50 92.50 86.50 90.00 90.00 90.00 PD0091 TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX P 43 2 2 Y 40.30 40.30 221.56 90.00 90.00 90.00 PD0092 POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1/POU P 41 21 2 Y DOMAIN, CLASS 2, ASSOCIATING FACTOR 1/DNA COMPLEX 93.72 93.72 152.65 90.00 90.00 90.00 PD0102 TRANSCRIPTION FACTOR CREB/DNA COMPLEX C 2 Y 110.61 49.32 79.25 90.00 122.18 90.00 PD0107 REPLICATION INITIATION PROTEIN/DNA COMPLEX C 2 Y 108.44 81.85 73.89 90.00 121.53 90.00 PD0109 PURINE REPRESSOR/DNA COMPLEX C 2 2 21 Y 176.45 95.19 81.78 90.00 90.00 90.00 PD0110 HIGH MOBILITY GROUP PROTEIN D/DNA COMPLEX P 21 21 21 Y 43.74 53.80 86.84 90.00 90.00 90.00 PD0111 MHC CLASS II TRANSCRIPTION FACTOR HRFX1/DNA C 2 Y COMPLEX 72.84 42.75 52.28 90.00 109.21 90.00 PD0112 TATA-BOX BINDING PROTEIN, GENERAL TRANSCRIPTION P 21 Y FACTOR IIB/DNA COMPLEX 118.45 122.30 140.22 90.00 113.08 90.00 -------------------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0114 ENGRAILED HOMEODOMAIN (MUTANT Q50A)/DNA COMPLEX C 2 Y 126.90 45.55 71.62 90.00 119.90 90.00 PD0115 RETINOIC ACID RECEPTOR RXR ALPHA AND RAR P 21 21 21 Y ALPHA/DNA COMPLEX 80.66 33.90 101.86 90.00 90.00 90.00 PD0116 ETS-DOMAIN PROTEIN ELK-1/DNA COMPLEX P 21 Y 33.24 140.52 38.62 90.00 115.52 90.00 PD0118 LAC REPRESSOR/DNA COMPLEX R 3 2 Y 251.44 251.44 204.79 90.00 90.00 120.00 PD0121 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, P 1 Y POLYPEPTIDE A/DNA COMPLEX 41.37 60.70 63.99 115.18 89.99 90.00 PD0122 TETRACYCLINE REPRESSOR/DNA COMPLEX C 2 2 21 Y 38.04 193.20 91.75 90.00 90.00 90.00 PD0142 DNA MISMATCH REPAIR PROTEIN MUTS/DNA COMPLEX P 21 21 21 Y 103.17 114.22 160.79 90.00 90.00 90.00 PD0144 SINGLE-STRAND DNA-BINDING PROTEIN/DNA COMPLEX C 2 Y 98.69 71.08 79.16 90.00 91.93 90.00 PD0145 MULTIDRUG-EFFLUX TRANSPORTER REGULATOR/DNA COMPLEX P 43 2 2 Y 110.15 110.15 144.59 90.00 90.00 90.00 PD0146 MULTIDRUG-EFFLUX TRANSPORTER REGULATOR/DNA COMPLEX P 43 2 2 Y 109.49 109.49 144.32 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0148 CYP1(HAP1-PC7) ACTIVATORY PROTEIN/DNA COMPLEX P 21 21 21 Y 85.90 90.90 96.50 90.00 90.00 90.00 PD0154 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 42.00 57.00 147.00 90.00 96.00 90.00 PD0155 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0156 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0157 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0158 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0159 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0160 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0161 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0162 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 42.00 57.00 147.00 90.00 96.00 90.00 -------------------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0163 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 42.00 147.00 57.00 90.00 90.50 90.00 PD0164 TRANSCRIPTION INITIATION FACTOR TFIID-1/DNA P 21 Y COMPLEX 41.80 146.70 57.40 90.00 90.50 90.00 PD0165 FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO P 31 Y ZIF12/DNA COMPLEX 86.30 86.30 133.00 90.00 90.00 120.00 PD0167 REPLICATION TERMINATION PROTEIN/DNA COMPLEX P 32 2 1 Y 44.78 44.78 395.58 90.00 90.00 120.00 PD0170 DIPHTHERIA TOXIN REPRESSOR/DNA COMPLEX P 41 Y 116.18 116.18 142.92 90.00 90.00 90.00 PD0173 METHIONINE REPRESSOR MUTANT (Q44K)/ DNA COMPLEX P 32 2 1 Y 117.18 117.18 90.09 90.00 90.00 120.00 PD0180 TRANSCRIPTION FACTOR PAP1/DNA COMPLEX R 3 Y 240.91 240.91 43.87 90.00 90.00 120.00 PD0181 DNA MISMATCH REPAIR PROTEIN MUTS/DNA COMPLEX P 21 21 21 Y 103.72 113.50 160.50 90.00 90.00 90.00 PD0182 HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX C 2 Y 103.15 32.99 42.57 90.00 109.90 90.00 PD0183 HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX C 2 Y 105.14 33.73 77.84 90.00 118.35 90.00 -------------------------------------------------------------------------------- Page 7 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0184 HEAT SHOCK FACTOR PROTEIN/DNA COMPLEX C 2 Y 106.51 34.02 78.21 90.00 119.31 90.00 PD0185 STAPHYLOCOCCAL ACCESSORY REGULATOR A, 5'- P 21 Y D(P*AP*TP*AP*TP*AP*TP*A)-3' 54.50 65.20 57.80 90.00 118.00 90.00 PD0186 TATA BOX ZINC FINGER PROTEIN/DNA COMPLEX P 64 Y 105.10 105.10 104.60 90.00 90.00 120.00 PD0187 TATA BOX ZINC FINGER PROTEIN/DNA COMPLEX P 64 Y 104.80 104.80 104.20 90.00 90.00 120.00 PD0191 ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA)/DNA COMPLEX P 1 Y 44.92 52.02 78.88 85.84 76.61 74.48 PD0193 ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA)/DNA COMPLEX P 1 Y 35.87 39.60 58.56 84.13 72.09 70.20 PD0198 CAAT/ENHANCER BINDING PROTEIN BETA/DNA COMPLEX C 2 2 21 Y 121.11 163.60 109.33 90.00 90.00 90.00 PD0199 FATTY ACID METABOLISM REGULATOR PROTEIN/DNA P 21 21 21 Y COMPLEX 83.73 110.15 130.28 90.00 90.00 90.00 PD0201 DNA MISMATCH REPAIR PROTEIN MUTS/DNA Complex P 21 21 21 Y 89.96 92.37 261.33 90.00 90.00 90.00 PD0204 CAAT/ENHANCER BINDING PROTEIN BETA/DNA COMPLEX P 21 21 2 Y 102.17 109.27 127.41 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 8 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0205 RUNT-RELATED TRANSCRIPTION FACTOR 1/DNA Complex P 21 21 21 Y 51.09 104.07 116.19 90.00 90.00 90.00 PD0208 HEPATOCYTE NUCLEAR FACTOR 1-ALPHA/DNA Complex P 41 Y 50.39 50.39 207.27 90.00 90.00 90.00 PD0210 CORE-BINDING FACTOR ALPHA SUBUNIT1, CORE-BINDING P 43 21 2 Y FACTOR CBF-BETA/DNA Complex 115.03 115.03 133.93 90.00 90.00 90.00 PD0211 HOMEOTIC PROTEIN MSX-1/DNA Complex P 21 21 21 Y 33.60 60.96 82.30 90.00 90.00 90.00 PD0214 TonEBP/DNA Complex P 21 21 21 Y 59.57 95.37 158.43 90.00 90.00 90.00 PD0219 NARL/DNA Complex P 21 Y 76.26 52.74 83.86 90.00 90.00 90.00 PD0221 NC2/TBP/DNA Complex C 2 2 21 Y 76.68 119.08 155.08 90.00 90.00 90.00 PD0222 C-REL PROTO-ONCOGENE PROTEIN/DNA Complex P 43 21 2 Y 99.32 99.32 196.25 90.00 90.00 90.00 PD0223 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Complex C 2 2 21 Y 176.05 95.04 81.51 90.00 90.00 90.00 PD0224 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Complex C 2 2 21 Y 175.92 95.25 81.35 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 9 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0225 OCTAMER-BINDING TRANSCRIPTION FACTOR 1/DNA Complex C 2 Y 93.30 52.40 69.00 90.00 127.60 90.00 PD0226 PURINE NUCLEOTIDE SYNTHESIS REPRESSOR/DNA Complex C 2 2 21 Y 175.38 92.61 80.64 90.00 90.00 90.00 PD0227 REGULATORY PROTEIN E2/DNA Complex C 2 2 21 Y 69.88 82.19 96.07 90.00 90.00 90.00 PD0230 ZIF268/DNA Complex C 2 2 21 Y 44.26 56.24 131.47 90.00 90.00 90.00 PD0231 ZIF268/DNA Complex C 2 2 21 Y 43.60 56.05 131.56 90.00 90.00 90.00 PD0232 FATTY ACID METABOLISM REGULATOR PROTEIN/DNA P 61 2 2 Y Complex 92.99 92.99 334.83 90.00 90.00 120.00 PD0233 SERUM RESPONSE FACTOR, ETS-DOMAIN PROTEIN ELK- P 21 21 2 Y 4/DNA Complex 142.68 144.39 75.93 90.00 90.00 90.00 PD0241 PROTO-ONCOGENE C-JUN/DNA Complex P 21 Y 40.72 78.21 57.34 90.00 110.79 90.00 PD0243 SMAD3/DNA Complex P 21 Y 45.60 60.40 71.60 90.00 102.00 90.00 PD0245 METHIONINE REPRESSOR/DNA Complex P 21 21 21 Y 39.96 64.00 114.47 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 10 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0246 METHIONINE REPRESSOR/DNA Complex P 32 2 1 Y 117.50 117.50 90.21 90.00 90.00 120.00 PD0247 METHIONINE REPRESSOR/DNA Complex P 62 2 2 Y 118.39 118.39 83.71 90.00 90.00 120.00 PD0248 METHIONINE REPRESSOR/DNA Complex P 32 Y 119.42 119.42 84.83 90.00 90.00 120.00 PD0249 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA P 65 Y 5'REGION/DNA Complex 174.70 174.70 151.95 90.00 90.00 120.00 PD0250 LACTOSE OPERON REPRESSOR/DNA Complex R 3 2 Y 255.77 255.77 206.79 90.00 90.00 120.00 PD0257 MATING-TYPE PROTEIN ALPHA-2/DNA Complex P 21 Y 38.94 70.24 68.29 90.00 105.42 90.00 PD0258 ETS-domain protein ELK-4/Serum response P 63 Y factor/DNA Complex 161.78 161.78 41.22 90.00 90.00 120.00 PD0259 PAIRED BOX PROTEIN PAX5/C-ETS-1 PROTEIN/DNA P 21 21 21 Y COMPLEX 77.84 89.75 170.74 90.00 90.00 90.00 PD0260 C-ETS-1 PROTEIN/DNA Complex C 2 Y 93.74 74.58 79.14 90.00 116.14 90.00 PD0261 C-ETS-1 PROTEIN/DNA COMPLEX C 2 Y 94.04 75.27 79.43 90.00 118.28 90.00 -------------------------------------------------------------------------------- Page 11 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0268 VITAMIN D3 RECEPTOR/DNA Complex P 43 21 2 Y 62.14 62.14 241.75 90.00 90.00 90.00 PD0269 VITAMIN D3 RECEPTOR/DNA Complex P 43 21 2 Y 61.50 61.50 241.97 90.00 90.00 90.00 PD0270 VITAMIN D3 RECEPTOR/DNA Complex P 43 21 2 Y 61.15 61.15 241.80 90.00 90.00 90.00 PD0274 OCTAMER-BINDING TRANSCRIPTION FACTOR 1/DNA Complex P 62 2 2 Y 131.25 131.25 116.50 90.00 90.00 120.00 PD0282 REPLICATION PROTEIN E1/DNA Complex P 21 Y 84.25 103.65 125.00 90.00 99.53 90.00 PD0283 REPLICATION PROTEIN E1/DNA Complex C 2 Y 149.11 110.60 75.08 90.00 116.85 90.00 PD0284 SIGMA FACTOR SIGA/DNA Complex P 21 21 21 Y 36.18 62.65 94.81 90.00 90.00 90.00 PD0288 CAAT/ENHANCER BINDING PROTEIN BETA/MYB PROTO- P 21 Y ONCOGENE PROTEIN/DNA COMPLEX 41.73 156.97 55.87 90.00 100.16 90.00 PD0289 CAAT/ENHANCER BINDING PROTEIN BETA/MYB PROTO- P 21 21 21 Y ONCOGENE PROTEIN/DNA Complex 62.68 73.38 161.70 90.00 90.00 90.00 PD0290 CAAT/ENHANCER BINDING PROTEIN BETA/MYB P 21 21 2 Y TRANSFORMING PROTEIN/DNA Complex 109.86 166.70 39.60 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 12 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0297 SEQA PROTEIN/DNA Complex P 6 2 2 Y 152.59 152.59 119.36 90.00 90.00 120.00 PD0298 Transcriptional activator protein traR/DNA Complex P 21 Y 92.30 58.37 127.45 90.00 102.81 90.00 PD0299 CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA C 2 2 21 Y Complex, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 136.99 152.80 76.06 90.00 90.00 90.00 PD0305 RNA polymerase Holoenzyme/DNA P 43 2 2 Y 180.95 180.95 523.46 90.00 90.00 90.00 PD0306 CATABOLITE GENE ACTIVATOR PROTEIN/DNA-directed P 62 2 2 Y RNA polymerase alpha chain (E.C.2.7.7.6)/DNA Complex, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 175.97 175.97 158.02 90.00 90.00 120.00 PD0307 Nuclear factor NF-kappa-B p65 subunit/Nuclear C 2 Y factor NF-kappa-B p50 subunit/DNA Complex 137.53 138.01 89.32 90.00 97.25 90.00 PD0308 MATING-TYPE PROTEIN A-1, Mating-type protein P 65 Y alpha-2/DNA Complex 54.17 54.17 164.23 90.00 90.00 120.00 PD0309 NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT/NUCLEAR C 2 Y FACTOR NF-KAPPA-B P50 SUBUNIT/DNA Complex 137.84 138.00 90.04 90.00 97.28 90.00 PD0310 NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT/NUCLEAR C 2 2 2 Y FACTOR NF-KAPPA-B P50 SUBUNIT/DNA Complex 137.13 179.70 97.07 90.00 90.00 90.00 PD0311 T-BOX TRANSCRIPTION FACTOR TBX3/DNA Complex P 21 21 21 Y 39.04 104.91 125.31 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 13 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0312 Zif23-GCN4 Chimera/DNA Complex P 31 2 1 Y 87.40 87.40 118.69 90.00 90.00 120.00 PD0314 Stage 0 sporulation protein A/DNA P 21 Y 50.92 83.30 91.24 90.00 94.18 90.00 PD0315 SeqA protein/DNA Complex P 42 Y 106.49 106.49 49.08 90.00 90.00 90.00 PD0338 PAIRED BOX PROTEIN PAX-5, C-ETS-1 PROTEIN/DNA P 21 21 2 Y Complex 77.27 171.23 44.71 90.00 90.00 90.00 PD0339 DELETED IN SPLIT HAND/SPLIT FOOT PROTEIN 1/BREAST I 4 2 2 Y CANCER TYPE 2 SUSCEPTIBILITY PROTEIN/DNA Complex 198.87 198.87 200.05 90.00 90.00 90.00 PD0341 Ndt80 protein/DNA Complex C 2 2 21 Y 70.14 78.89 161.52 90.00 90.00 90.00 PD0363 Myocyte-specific enhancer factor 2B/Calcineurin- P 41 2 2 Y binding protein Cabin 1/DNA complex 70.14 70.14 151.88 90.00 90.00 90.00 PD0368 Transcription initiation factor P 21 21 2 Y TFIID/Transcription factor IIIB 70 kDa subunit/DNA 93.61 152.60 256.64 90.00 90.00 90.00 PD0369 Transcription initiation factor TFIID, P 21 21 21 Y Transcription initiation factor IIA large chain, Transcription initiation factor IIA small chain/DNA Complex 59.01 92.02 117.02 90.00 90.00 90.00 PD0371 Chromosomal replication initiator protein dnaA/DNA P 41 21 2 Y 50.38 50.38 158.83 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 14 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0386 Myc proto-oncogene protein/Max protein/DNA P 1 Y 39.24 45.13 86.48 87.91 84.61 71.50 PD0387 MAD PROTEIN/MAX PROTEIN/DNA P 1 Y 47.35 56.02 65.60 88.82 79.08 67.11 PD0388 DNA Mismatch Repair protein MutS/DNA P 21 21 21 Y 103.44 113.22 160.28 90.00 90.00 90.00 PD0393 TATA box binding protein, Transcription P 21 21 21 Y initiation factor IIA alpha and beta chains, Transcription initiation factor IIA gamma chain/DNA Complex 59.62 90.88 125.26 90.00 90.00 90.00 PD0395 CCAAT/enhancer binding protein alpha/DNA P 21 21 2 Y 140.89 53.09 67.41 90.00 90.00 90.00 PD0398 CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX P 31 2 1 Y 77.15 77.15 143.20 90.00 90.00 120.00 PD0399 CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX P 31 2 1 Y 76.90 76.90 143.64 90.00 90.00 120.00 PD0400 CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX P 31 2 1 Y 78.05 78.05 142.79 90.00 90.00 120.00 PD0401 CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX C 2 2 21 Y 136.99 152.80 76.06 90.00 90.00 90.00 PD0405 Integration Host Factor Alpha-subunit/Integration P 21 21 21 Y Host Factor Beta-subunit/DNA (35-MER)/5'- D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)- 3'/5'- D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP *CP*AP*CP*C)-3' 46.80 60.11 181.18 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 15 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0406 Integration Host Factor Alpha-subunit/Integration P 21 21 21 Y Host Factor Beta-subunit/Phage lambda H' site/5'- D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)- 3'/5'- D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP *CP*AP*CP*C)-3' 46.66 58.83 181.31 90.00 90.00 90.00 PD0407 Integration Host Factor Alpha-subunit/Integration P 21 21 21 Y Host Factor Beta-subunit/DNA (35-MER)/5'- D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)- 3'/5'- D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP *CP*AP*CP*C)-3' 46.66 58.83 181.31 90.00 90.00 90.00 PD0408 Nuclear factor of activated T-cells, cytoplasmic P 21 Y 2/DNA 100.65 94.85 112.79 90.00 104.34 90.00 PD0409 SMAD 3/Smad binding element P 21 Y 45.60 60.40 71.60 90.00 102.00 90.00 PD0424 Early growth response protein 1/DNA Complex P 31 Y 70.63 70.63 99.61 90.00 90.00 120.00 PD0429 NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC P 1 Y 2/DNA Complex 74.11 80.32 80.31 71.20 78.97 78.94 PD0452 39 kDa initiator binding protein/FERREDOXIN INR P 21 21 2 Y Complex 81.34 41.43 58.39 90.00 90.00 90.00 PD0453 39 kDa initiator binding protein/ALPHA-SCS INR F 2 3 Y Complex 292.00 292.00 292.00 90.00 90.00 90.00 PD0455 Homeobox protein Hox-A9, Pre-B-cell leukemia C 2 2 21 Y transcription factor-1/DNA Complex 60.77 114.85 108.17 90.00 90.00 90.00 PD0456 Transcription termination factor rho/DNA Complex C 2 Y 118.56 204.33 147.37 90.00 95.86 90.00 -------------------------------------------------------------------------------- Page 16 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0464 Nuclear factor of activated T-cells, cytoplasmic P 21 21 21 Y 2/DNA Complex 81.70 122.90 241.60 90.00 90.00 90.00 PD0470 Retinoic acid receptor RXR-alpha/Ecdysone P 21 21 21 Y receptor/DNA Complex 55.62 60.26 115.00 90.00 90.00 90.00 PD0471 Ultraspiracle protein/Ecdysone receptor/DNA P 21 21 21 Y Complex 50.37 59.88 113.77 90.00 90.00 90.00 PD0475 Glucocorticoid receptor/DNA Complex P 21 21 21 Y 38.50 97.50 120.50 90.00 90.00 90.00 PD0476 Glucocorticoid receptor/DNA Complex P 21 21 21 Y 38.50 99.70 121.90 90.00 90.00 90.00 PD0480 Transcriptional repressor protein korB/DNA Complex P 32 2 1 Y 110.44 110.44 160.53 90.00 90.00 120.00 PD0492 sigma factor SigA/Repressor protein CI/DNA Complex P 21 Y 47.26 71.27 77.20 90.00 91.34 90.00 PD0495 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'/5'- P 21 21 21 Y D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3'/MutY 37.76 85.70 142.09 90.00 90.00 90.00 PD0496 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'/5'- P 21 21 21 Y D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3'/MutY 37.76 85.54 141.16 90.00 90.00 90.00 PD0497 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'/5'- P 21 21 21 Y D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3'/MutY 37.98 85.73 141.63 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 17 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PD0506 Rep PROTEIN/DNA Complex P 21 Y 78.67 131.71 82.16 90.00 112.68 90.00 PDE025 SEGMENTATION PROTEIN PAIRED/DNA COMPLEX C 2 2 21 Y 72.21 146.89 77.23 90.00 90.00 90.00 PDO001 REPLICATION PROTEIN A/DNA COMPLEX P 21 21 21 Y 34.25 77.99 95.36 90.00 90.00 90.00 PDR001 434 CRO/DNA COMPLEX P 21 Y 49.20 47.60 61.70 90.00 109.50 90.00 PDR002 434 CRO/DNA COMPLEX C 2 n.a. 351.80 78.20 129.10 90.00 129.40 90.00 PDR003 LAMBDA CRO/DNA COMPLEX P 32 Y 154.80 154.80 86.00 90.00 90.00 120.00 PDR004 434 REPRESSOR/DNA COMPLEX P 21 21 21 Y 148.30 65.00 55.40 90.00 90.00 90.00 PDR005 434 CRO/DNA COMPLEX I 4 2 2 n.a. 166.00 166.00 139.00 90.00 90.00 90.00 PDR006 CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA C 2 2 21 Y COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 138.00 152.60 76.00 90.00 90.00 90.00 PDR008 MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE P 62 2 2 Y 121.35 121.35 84.81 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 18 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDR009 TRP REPRESSOR/DNA COMPLEX + TRYPTOPHAN P 21 Y 43.65 72.43 107.39 90.00 94.96 90.00 PDR010 LAMBDA REPRESSOR/DNA COMPLEX P 21 Y 37.22 68.72 57.03 90.00 92.20 90.00 PDR011 434 REPRESSOR/DNA COMPLEX P 21 21 21 Y 149.29 64.29 27.69 90.00 90.00 90.00 PDR012 ARC REPRESSOR/DNA COMPLEX P 21 Y 65.67 56.73 53.80 90.00 106.90 90.00 PDR013 TRP REPRESSOR/DNA COMPLEX + TRYPTOPHAN C 2 Y 112.34 90.16 58.65 90.00 113.92 90.00 PDR015 434 REPRESSOR/DNA COMPLEX P 21 21 21 Y 150.90 64.50 27.80 90.00 90.00 90.00 PDR016 LAMBDA REPRESSOR (TRIPLE MUTANT)/DNA COMPLEX P 21 Y 37.15 68.90 56.79 90.00 92.20 90.00 PDR018 PRD PAIRED/DNA COMPLEX P 21 21 21 Y 39.60 68.60 100.50 90.00 90.00 90.00 PDR020 PURINE REPRESSOR/DNA COMPLEX + HYPOXANTHINE 1 C 2 2 21 Y 175.85 94.79 81.84 90.00 90.00 90.00 PDR021 RETINOIC ACID RECEPTOR, THYROID HORMONE P 21 21 21 Y RECEPTOR/DNA COMPLEX 40.90 65.60 125.70 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 19 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDR022 P53 TUMOR SUPPRESSOR/DNA COMPLEX C 2 Y 117.50 67.90 108.80 90.00 105.50 90.00 PDR024 CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA C 2 2 21 Y COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 136.93 152.80 76.00 90.00 90.00 90.00 PDR025 CATABOLITE GENE ACTIVATOR PROTEIN (CAP) C 2 2 21 Y MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC- MONOPHOSPHATE 137.29 153.10 76.20 90.00 90.00 90.00 PDR026 LACTOSE OPERON REPRESSOR/DNA COMPLEX C 2 Y 104.30 224.40 112.10 90.00 95.70 90.00 PDR027 P53 TUMOR SUPPRESSOR/DNA COMPLEX C 2 Y 117.50 67.90 108.80 90.00 105.50 90.00 PDR028 PURINE REPRESSOR MUTANT/DNA COMPLEX + C 2 2 21 Y HYPOXANTHINE 1 176.06 95.49 80.49 90.00 90.00 90.00 PDR029 PURINE REPRESSOR/DNA COMPLEX + HYPOXANTHINE 1 C 2 2 21 Y 176.16 94.99 81.57 90.00 90.00 90.00 PDR030 PURINE REPRESSOR/DNA COMPLEX + GUANINE C 2 2 21 Y 175.99 95.08 81.51 90.00 90.00 90.00 PDR031 TATA-BINDING PROTEIN, TRANSCRIPTION INITIATION C 2 Y FACTOR IIB/DNA COMPLEX 125.70 91.20 74.20 90.00 122.70 90.00 PDR032 HUMAN NF-KAPPA-B P52 BOUND TO DNA P 21 21 21 Y 44.20 121.00 134.90 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 20 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDR033 NF-KAPPA B P65 AND P50 SUBUNITS/DNA COMPLEX P 43 21 2 Y 106.61 106.61 206.56 90.00 90.00 90.00 PDR034 PIT-1 MUTANT/DNA COMPLEX P 1 Y 42.50 50.10 55.80 76.70 79.30 67.20 PDR035 INTERFERON REGULATORY FACTOR 1/DNA COMPLEX R 3 Y 84.80 84.80 203.70 90.00 90.00 120.00 PDR036 MCM1 TRANSCRIPTIONAL REGULATOR, MAT ALPHA-2 P 21 21 21 Y TRANSCRIPTIONAL REPRESSOR/DNA COMPLEX 70.62 72.55 150.70 90.00 90.00 90.00 PDR040 PURINE REPRESSOR/CO-REPRESSOR/DNA COMPLEX C 2 2 21 Y 175.65 94.68 81.83 90.00 90.00 90.00 PDR041 PURINE REPRESSOR/CO-REPRESSOR/DNA COMPELX C 2 2 21 Y 175.81 94.87 81.75 90.00 90.00 90.00 PDR042 PURINE REPRESSOR/DNA COMPLEX, GUANINE C 2 2 21 Y 175.93 95.06 81.53 90.00 90.00 90.00 PDR043 PURINE REPRESSOR/DNA COMPLEX, ADENINE C 2 2 21 Y 175.81 95.17 81.31 90.00 90.00 90.00 PDR044 PURINE REPRESSOR/DNA COMPLEX, GUANINE C 2 2 21 Y 175.92 95.05 81.59 90.00 90.00 90.00 PDR045 PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE C 2 2 21 Y 175.98 95.19 81.22 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 21 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDR046 PURINE REPRESSOR/DNA COMPLEX, HYPOXANTHINE C 2 2 21 Y 175.93 95.02 81.78 90.00 90.00 90.00 PDR049 MAT A1/ALPHA2/DNA TERNARY COMPLEX P 61 Y 132.25 132.25 45.25 90.00 90.00 120.00 PDR050 TRANSCRIPTION FACTOR NF-KB P65/DNA COMPLEX P 21 21 21 Y 65.69 81.08 167.56 90.00 90.00 90.00 PDR051 TRANSCRIPTION FACTOR NF-KB P65/DNA COMPLEX P 21 21 21 Y 65.81 80.62 167.80 90.00 90.00 90.00 PDR052 TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX C 2 2 21 Y 76.60 148.20 181.10 90.00 90.00 90.00 PDR053 LAMBDA-CRO REPRESSOR/DNA COMPLEX I 21 3 Y 102.97 102.97 102.97 90.00 90.00 90.00 PDR056 MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN/DNA COMPLEX P 41 21 2 Y 47.10 47.10 298.20 90.00 90.00 90.00 PDRC01 GLUCOCORTICOID RECEPTOR/DNA COMPLEX P 21 21 21 Y 38.50 95.70 120.50 90.00 90.00 90.00 PDRC03 ESTROGEN RECEPTOR/DNA COMPLEX P 21 21 21 Y 51.60 90.80 114.60 90.00 90.00 90.00 PDT002 GCN4/DNA COMPLEX P 21 21 21 Y 49.13 88.54 59.24 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 22 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT003 GAL4/DNA COMPLEX P 43 21 2 Y 80.85 80.85 73.70 90.00 90.00 90.00 PDT004 ENGRAILED HOMEODOMAIN/DNA COMPLEX C 2 Y 131.20 45.50 72.90 90.00 119.00 90.00 PDT005 MAT-ALPHA2 HOMEODOMAIN/DNA COMPLEX P 21 Y 60.78 39.93 68.79 90.00 97.35 90.00 PDT006 ZIF268/DNA COMPLEX C 2 2 21 Y 45.40 56.20 130.80 90.00 90.00 90.00 PDT007 GCN4/DNA COMPLEX P 41 21 2 Y 58.66 58.66 86.66 90.00 90.00 90.00 PDT008 FIVE-FINGER GLI/DNA COMPLEX P 21 21 21 Y 149.00 50.20 45.40 90.00 90.00 90.00 PDT009 TATA BINDING PROTEIN (TBP)/DNA COMPLEX P 21 Y 41.80 146.50 57.60 90.00 90.60 90.00 PDT011 TRAMTRACK DNA-BINDING DOMAIN/DNA COMPLEX P 21 21 21 Y 60.70 64.60 117.60 90.00 90.00 90.00 PDT012 TATA BINDING PROTEIN (TBP)/DNA COMPLEX P 43 Y 100.77 100.77 66.50 90.00 90.00 90.00 PDT013 HNF-3/FORK HEAD DNA-RECOGNITION MOTIF/DNA COMPLEX P 31 Y 74.60 74.60 85.05 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 23 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT014 C-FOS:C-JUN PROTO-ONCOGENE PROTEIN/DNA COMPLEX P 21 21 2 Y 241.10 48.69 66.00 90.00 90.00 90.00 PDT015 NUCLEAR FACTOR KAPPA-B (NF-KB)/DNA COMPLEX C 2 Y 84.20 132.10 80.10 90.00 93.10 90.00 PDT016 MYOD BHLH DOMAIN/DNA COMPLEX P 21 21 2 Y 222.80 70.80 30.00 90.00 90.00 90.00 PDT017 PYRIMIDINE PATHWAY REGULATOR 1/DNA COMPLEX I 2 2 2 Y 53.80 92.60 174.70 90.00 90.00 90.00 PDT019 OCT-1 POU DOMAIN/DNA COMPLEX C 2 2 21 Y 97.50 89.80 80.00 90.00 90.00 90.00 PDT020 TRANSCRIPTION FACTOR E47 (TF E47) C 2 n.a. 63.70 35.30 90.20 90.00 95.50 90.00 PDT021 SERUM RESPONSE FACTOR (SRF)/DNA COMPLEX P 43 21 2 Y 106.84 106.84 76.88 90.00 90.00 90.00 PDT022 NUCLEAR FACTOR KAPPA-B (NF-KB) MUTANT/DNA COMPLEX P 41 21 2 Y 137.00 137.00 57.00 90.00 90.00 90.00 PDT023 TRANSCRIPTION FACTOR MAX (TF MAX)/DNA COMPLEX P 61 2 2 Y 72.20 72.20 146.40 90.00 90.00 120.00 PDT024 TATA BINDING PROTEIN (TBP)/DNA COMPLEX P 21 21 21 Y 66.97 67.40 86.23 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 24 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT025 TATA BINDING PROTEIN (TBP)/DNA COMPLEX P 21 Y 42.00 147.00 57.00 90.00 90.50 90.00 PDT027 UPSTREAM STIMULATORY FACTOR/DNA COMPLEX P 21 21 21 Y 136.60 54.70 44.40 90.00 90.00 90.00 PDT028 MAT A1 HOMEODOMAIN, MAT ALPHA2 HOMEODOMAIN/DNA P 61 Y COMPLEX 132.38 132.38 45.86 90.00 90.00 120.00 PDT029 GCN4/DNA COMPLEX P 41 21 2 Y 58.66 58.66 86.88 90.00 90.00 90.00 PDT030 GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX P 21 21 21 Y 38.72 76.07 118.88 90.00 90.00 90.00 PDT031 EVEN-SKIPPED HOMEODOMAIN/DNA Complex P 21 Y 34.06 61.61 39.99 90.00 90.00 90.00 PDT032 TRANSCRIPTION FACTOR IIB (TFIIB), TATA BINDING P 21 21 21 Y PROTEIN (TBP)/DNA COMPLEX 69.90 78.00 134.70 90.00 90.00 90.00 PDT033 TRANSCRIPTION FACTOR PU.1 (TF PU.1)/DNA COMPLEX C 2 Y 89.10 101.90 55.60 90.00 111.20 90.00 PDT034 TATA BINDING PROTEIN (TBP)/DNA COMPLEX P 2 21 21 Y 45.80 78.00 97.40 90.00 90.00 90.00 PDT035 RAP1/DNA COMPLEX P 31 Y 90.61 90.61 80.36 90.00 90.00 120.00 -------------------------------------------------------------------------------- Page 25 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT036 TATA BINDING PROTEIN (TBP), TRANSCRIPTION FACTOR P 21 21 21 Y IIA (TFIIA)/DNA COMPLEX 59.15 93.05 117.83 90.00 90.00 90.00 PDT037 TATA BINDING PROTEIN (TBP), TRANSCRIPTION FACTOR P 21 21 21 n.a. IIA (TFIIA) 61.70 94.00 124.00 90.00 90.00 90.00 PDT038 YY1 ZINC FINGER DOMAIN MUTANT/DNA COMPLEX P 21 21 21 Y 44.00 65.70 117.10 90.00 90.00 90.00 PDT039 ZIF268 ZINC FINGER PEPTIDE/DNA COMPLEX C 2 2 21 Y 45.40 56.20 130.80 90.00 90.00 90.00 PDT040 INTEGRATION HOST FACTOR/DNA COMPLEX P 21 21 21 Y 47.36 59.92 180.80 90.00 90.00 90.00 PDT042 MAX/DNA COMPLEX P 65 2 2 Y 108.00 108.00 127.00 90.00 90.00 120.00 PDT043 ENGRAILED HOMEODOMAIN Q50K VARIANT/DNA COMPLEX C 2 Y 127.72 45.34 72.47 90.00 119.53 90.00 PDT044 PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR P 6 Y (PUT3)/DNA COMPLEX 121.65 121.65 39.10 90.00 90.00 120.00 PDT045 T DOMAIN/DNA COMPLEX P 21 21 21 Y 37.90 113.90 149.00 90.00 90.00 90.00 PDT046 PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN P 21 21 21 Y PHO4/DNA COMPLEX 53.51 68.30 108.77 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 26 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT048 GA BINDING PROTEIN ALPHA, GA BINDING PROTEIN BETA C 2 Y 1/DNA COMPLEX 201.60 34.55 59.26 90.00 99.83 90.00 PDT049 CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, P 31 2 1 Y ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 79.19 79.19 140.40 90.00 90.00 120.00 PDT050 TERNARY PROTEIN-DNA COMPLEX (NFAT-FOS-JUN/DNA) P 21 Y 64.66 85.46 83.37 90.00 112.03 90.00 PDT055 THREE-FINGER ZIF268 PEPTIDE/DNA COMPLEX C 2 2 21 Y 43.00 55.90 128.40 90.00 90.00 90.00 PDT056 THREE-FINGER ZIF268 PEPTIDE/DNA COMPLEX C 2 2 21 Y 43.30 55.80 129.90 90.00 90.00 90.00 PDT057 QGSR (THREE-FINGER ZIF268 VARIANT)/DNA COMPLEX C 2 2 21 Y 44.10 55.90 130.50 90.00 90.00 90.00 PDT058 RADR (ZIF268 VARIANT)/DNA COMPLEX C 2 2 21 Y 42.70 55.50 130.40 90.00 90.00 90.00 PDT059 ZINC FINGER/DNA COMPLEX C 2 2 21 Y 43.20 56.30 133.80 90.00 90.00 90.00 PDT060 ZINC FINGER/DNA COMPLEX C 2 2 21 Y 42.30 55.90 133.60 90.00 90.00 90.00 PDT061 ZINC FINGER/DNA COMPLEX C 2 2 21 Y 43.30 55.90 132.50 90.00 90.00 90.00 -------------------------------------------------------------------------------- Page 27 created by the NDB Project on Wed May 26 14:23:00 2004 CELL DIMENSIONS FOR PROTEIN/DNA (REGULATORY) -------------------------------------------------------------------------------- NDB ID Descriptor/a b c Alpha Beta Gamma SpcGrp Coord -------------------------------------------------------------------------------- PDT062 STEROL REGULATORY ELEMENT BINDING(STRE)/DNA P 61 2 2 Y COMPLEX 94.63 94.63 459.10 90.00 90.00 120.00 PDT063 PURINE REPRESSOR MUTANT L54M/PURF OPERATOR/DNA C 2 2 21 Y COMPLEX 175.89 94.93 81.90 90.00 90.00 90.00 PDT064 BINDING DOMAIN OF SKN-1/DNA COMPLEX C 2 2 21 Y 82.13 93.39 53.45 90.00 90.00 90.00 PDT065 SIX-FINGER TRANSCRIPTION FACTOR IIIA/DNA COMPLEX P 1 Y 64.18 64.71 78.03 90.07 92.98 102.95 PDTB41 CONSENSUS ZINC FINGER/DNA COMPLEX P 21 21 21 Y 62.07 165.53 46.27 90.00 90.00 90.00 PDTE01 REPLICATION-TERMINATOR PROTEIN (TUS)/DNA COMPLEX P 41 21 2 Y 68.15 68.15 230.72 90.00 90.00 90.00 PDV001 E2/DNA COMPLEX R 3 2(RHOM) Y 64.60 64.60 64.60 61.80 61.80 61.80 PDV004 CORE GP32/DNA COMPLEX P 65 2 2 Y 66.50 66.50 235.40 90.00 90.00 120.00 PH0008 T7 RNA polymerase(E.C.2.7.7.6)/DNA/RNA Complex P 1 Y 81.13 87.70 206.53 91.93 91.02 110.66 -------------------------------------------------------------------------------- Page 28 created by the NDB Project on Wed May 26 14:23:00 2004