CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- 1ROQ Z.Du, J.Yu, R.Andino, T.L.James Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3 Biochemistry, 42, 4373-4383, 2003. AR0005 Y.Tanaka, S.Fujii, H.Hiroaki, T.Sakata, T.Tanaka, S.Uesugi, K.-I.Tomita, Y.Kyogoku A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC) Nucleic Acids Res., 27, 949-955, 1999. AR0007 S.Eswaramoorthy, S.T.Rao, B.Pan, M.Sundaralingam Structure of the dodecamer r(GAUCACUUCGGU) with four 5'- overhang nucleotides Acta Crystallogr., Sect.D, 60, 8-12, 2004. AR0023 J.A.Ippolito, T.A.Steitz The Structure of the HIV-1 RRE High Affinity Rev Binding Site at 1.6 A Resolution J.Mol.Biol., 295, 711-717, 2000. AR0024 K.Wild, O.Weichenrieder, G.A.Leonard, S.Cusack The 2 A structure of helix 6 of the human signal recognition particle RNA Structure (London), 7, 1345-1352, 1999. AR0026 Y.Xiong, M.Sundaralingam Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge RNA, 6, 1316-1324, 2000. AR0027 Y.Xiong, M.Sundaralingam Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge RNA, 6, 1316-1324, 2000. ----------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:26:42 2004 CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- AR0028 L.-W.Hung, E.L.Holbrook, S.R.Holbrook The Crystal Structure of the Rev Binding Element of HIV-1 Reveals Novel Base Pairing and Conformational Variability Proc.Nat.Acad.Sci.USA, 97, 5107-5112, 2000. AR0029 J.Deng, Y.Xiong, C.Sudarsanakumar, K.Shi, M.Sundaralingam Crystal Structures of Two Forms of a 14-mer RNA/DNA Chimer Duplex with Double UU Bulges: A Novel Intramolecular U*(AU) Base Triple RNA, 7, 1425-1431, 2001. AR0032 J.A.Berglund, M.Rosbash, S.C.Schultz Crystal structure of a Model Branchpoint-U2 snRNA Duplex Containing Bulged Adenosines RNA, 7, 682-691, 2001. AR0033 J.Deng, Y.Xiong, C.Sudarsanakumar, K.Shi, M.Sundaralingam Crystal Structures of Two Forms of a 14mer RNA/DNA Chimer Duplex with Double UU Bulges: A Novel Intramolecular U*(AU) Base Triple RNA, 7, 1425-1431, 2001. AR0034 Y.Xiong, J.Deng, C.Sudarsanakumar, M.Sundaralingam Crystal Structure of an RNA Duplex r(gugucgcac)2 with Uridine Bulges J.Mol.Biol., 313, 573-582, 2001. AR0035 Y.Xiong, C.Sudarsanakumar, J.Deng, M.Pan, M.Sundaralingam Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA To be Published, n.a., n.a.-n.a., n.a.. AR0039 S.Lima, J.Hildenbrand, A.Korostelev, S.Hattman, H.Li CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC- FINGER PROTEIN: AN 18-bp DUPLEX AT 1.6A RESOLUTION RNA, 8, 924-932, 2002. ----------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:26:42 2004 CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- AR0041 J.Deng, Y.Xiong, B.Pan, M.Sundaralingam Structure of an RNA dodecamer containing a fragment from SRP domain IV of Escherichia coli Acta Crystallogr., Sect.D, 59, 1004-1011, 2003. AR0042 E.Ennifar, P.Walter, P.Dumas Self-cleaving activity in the duplex form of the HIV-1(Lai) RNA Dimerization Initiation Site To be Published, n.a., n.a.-n.a., n.a.. AR0043 E.Ennifar, P.Walter, P.Dumas Self-cleaving activity in the duplex form of the HIV-1(Lai) RNA Dimerization Initiation Site To be Published, n.a., n.a.-n.a., n.a.. AR0044 E.Ennifar, P.Walter, P.Dumas A crystallographic study of the binding of 13 metal ions to two related RNA duplexes. Nucleic Acids Res., 31, 2671-2682, 2003. AR0045 E.Ennifar, P.Walter, P.Dumas A crystallographic study of the binding of 13 metal ions to two related RNA duplexes Nucleic Acids Res., 31, 2671-2682, 2003. AR0046 E.Ennifar, P.Walter, P.Dumas A crystallographic study of the binding of 13 metal ions to two related RNA duplexes. Nucleic Acids Res., 31, 2671-2682, 2003. ARHB90 R.J.Carter, K.J.Baeyens, J.SantaLucia Jr., D.H.Turner, S.R.Holbrook The Crystal Structure of an RNA Oligomer Incorporating Tandem Adenosine- Inosine Mismatches Nucleic Acids Res., 25, 4117-4122, 1997. ----------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:26:42 2004 CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- ARM0107 Y.Tanaka, K.-I.Tomita, T.Sakata, H.Hiroaki, S.Uesugi, Y.Kyogoku, S.Fujii RNA Conformational Polymorphism: A'-RNA Conformation in the Crystal Structure of r(UGAGCUUCGGCUC) To be Published, n.a., n.a.-n.a., n.a.. DR0009 V.Tereshko, E.Skripkin, D.J.Patel Encapsulating Streptomycin within a small 40-mer RNA CHEM.BIOL., 10, 175-187, 2003. DR0010 V.Tereshko, E.Skripkin, D.J.Patel Encapsulating Streptomycin within a small 40-mer RNA CHEM.BIOL., 10, 175-187, 2003. UR0001 J. E.Wedekind, D. B.McKay Crystal Structure of a Lead-Dependent Ribozyme Revealing Metal Binding Sites Relevant to Catalysis Nat.Struct.Biol., 6, 261-268, 1999. UR0005 E.Ennifar, M.Yusupov, P.Walter, R.Marquet, C.Ehresmann, B.Ehresmann, P.Dumas The Crystal Structure of the Dimerization Initiation Site of Genomic HIV-1 RNA Reveals an Extended Duplex with Two Adenine Bulges Structure (London), 7, 1439-1449, 1999. UR0009 L.Jovine, T.Hainzl, C.Oubridge, W.G.Scott, J.Li, T.K.Sixma, A.Wonacott, T.Skarzynski, K.Nagai Crystal structure of the Ffh and EF-G binding sites in the conserved domain IV of Escherichia coli 4.5S RNA Structure (London), 8, 527-540, 2000. UR0025 S.Szep, J.Wang, P.B.Moore The crystal structure of a 26-nucleotide RNA containing a hook-turn RNA, 9, 44-51, 2003. ----------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:26:42 2004 CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- UR0028 J.E.Wedekind, D.B.McKay CRYSTAL STRUCTURE OF THE LEADZYME AT 1.8 A RESOLUTION: METAL ION BINDING AND THE IMPLICATIONS FOR CATALYTIC MECHANISM AND ALLO SITE REGULATION BIOCHEMISTRY, 42, 9554-9563, 2003. UR0029 C.M Dunham, J.B.Murray, W.G.Scott Crosslinked Hammerhead Ribozyme Initial State To be Published, n.a., n.a.-n.a., n.a.. UR0030 J.E.Wedekind, D.B.McKay CRYSTAL STRUCTURE OF THE LEADZYME AT 1.8 A RESOLUTION: METAL ION BINDING AND THE IMPLICATIONS FOR CATALYTIC MECHANISM AND ALLO SITE REGULATION BIOCHEMISTRY, 42, 9554-9563, 2003. UR0032 C.M.Dunham, J.B.Murray, W.G.Scott A Helical Pitch-induced Conformational Switch Activates Cleavage in the Hammerhead Ribozyme To be published, n.a., n.a.-n.a., n.a.. URF042 M.C.Wahl, S.T.Rao, M.Sundaralingam Structure of the RNA Hexamer, r(UUCGCG), with a 5'-UU- overhang Exhibiting Hoogsteen-Like trans U-U Base Pairs Nat.Struct.Biol., 3, 24-31, 1996. URL029 K.J.Baeyens, H.L.De Bondt, S.R.Holbrook Structure of an RNA Double Helix Including Uracil-Uracil Base Pairs in an Internal Loop Nat.Struct.Biol., 2, 56-62, 1995. URL050 S.E.Lietzke, C.L.Barnes, C.E.Kundrot The Structure of an RNA Dodecamer Shows How Tandem U-U Base Pairs Increase the Range of Stable RNA Structures and the Diversity of Recognition Sites Structure (London), 4, 917-930, 1996. ----------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:26:42 2004 CITATIONS FOR RNA DOUBLE HELICES WITH SPECIAL FEATURES ----------------------------------------------------------------------- NDB ID Citation ----------------------------------------------------------------------- URL051 K.J.Baeyens, H.L.De Bondt, A.Pardi, S.R.Holbrook A Curved RNA Helix Incorporating an Internal Loop with G-A and A-A Non-Watson-Crick Base Pairing Proc.Nat.Acad.Sci.USA, 93, 12851-12855, 1996. URL064 C.C.Correll, B.Freeborn, P.B.Moore, T.A.Steitz Metals, Motifs and Recognition in the Crystal Structure of a 5S rRNA Domain Cell(Cambridge,Mass.), 91, 705-712, 1997. URL065 C.C.Correll, B.Freeborn, P.B.Moore, T.A.Steitz Metals, Motifs and Recognition in the Crystal Structure of a 5S rRNA Domain Cell(Cambridge,Mass.), 91, 705-712, 1997. URL066 C.C.Correll, B.Freeborn, P.B.Moore, T.A.Steitz Metals, Motifs and Recognition in the Crystal Structure of a 5S rRNA Domain Cell(Cambridge,Mass.), 91, 705-712, 1997. URL069 C.C.Correll, B.Freeborn, P.B.Moore, T.A.Steitz Metals, Motifs and Recognition in the Crystal Structure of a 5S rRNA Domain Cell(Cambridge,Mass.), 91, 705-712, 1997. URX075 J.A.Ippolito, T.A.Steitz A 1.3 A resolution crystal structure of the HIV-1 trans- activation response region RNA stem reveals a metal ion- dependent bulge conformation Proc.Nat.Acad.Sci.USA, 95, 9819-9824, 1998. ----------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:26:42 2004