CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BD0011 J.Aymami, C.M.Nunn, S.Neidle DNA Minor-Groove Recognition of a Non-Self-Complementary AT- Rich Sequence by a Tris-Benzimidazole Ligand Nucleic Acids Res., 27, 2691-2698, 1999. BD0021 D. M. F.van Aalten, D. A.Erlanson, G. L.Verdine, L.Joshua- Tor A Structural Snapshot of Base-Pair Opening in DNA Proc.Nat.Acad.Sci.USA, 96, 11809-11814, 1999. BD0031 T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka Crystallographic Studies on Damaged DNAs. II. N6- Methoxyadenine can Present Two Alternate Faces for Watson- Crick Base-pairing, Leading to Pyrimidine Transition Mutagenesis J.Mol.Biol., 294, 1223-1230, 1999. BD0043 M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka Crystallization and Preliminary X-ray Analysis of a DNA Dodecamer Containing 2'-deoxy-5-formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? Acta Crystallogr., Sect.D, 57, 345-348, 2001. BD0044 M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka Crystallization and Preliminary X-ray Analysis of a DNA Dodecamer Containing 2'-deoxy-5-formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? Acta Crystallogr., Sect.D, 57, 345-348, 2001. BD0045 M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka Crystallization and Preliminary X-ray Analysis of a DNA Dodecamer Containing 2'-deoxy-5-formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? Acta Crystallogr., Sect.D, 57, 345-348, 2001. BD0046 M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka Crystallization and Preliminary X-ray Analysis of a DNA Dodecamer Containing 2'-deoxy-5-formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? Acta Crystallogr., Sect.D, 57, 345-348, 2001. ---------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:26:23 2004 CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BD0048 M.T.Hossain, T.Chatake, T.Hikima, M.Tsunoda, T.Sunami, Y.Ueno, A.Matsuda, A.Takenaka Crystallographic studies on damaged DNAs, III. N4- methoxycytosine can form both Watson-Crick type and wobble base pairs in a B-form duplex J.Biochem.(Tokyo), 130, 9-12, 2001. BD0049 M.T.Hossain, T.Chatake, T.Hikima, M.Tsunoda, T.Sunami, Y.Ueno, A.Matsuda, A.Takenaka Crystallographic studies on damaged DNAs: III. N(4)- methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex J.Biochem.(Tokyo), 130, 9-12, 2001. BD0053 M.T.Hossain, T.Sunami, M.Tsunoda, T.Hikima, T.Chatake, Y.Ueno, A.Matsuda, A.Takenaka Crystallographic Studies on Damaged DNAs, IV. N4- Methoxycytosine Shows A Second Face for Watson-Crick Base- Pairing, Leading to Purine Transition Mutagenesis Nucleic Acids Res., 29, 3949-3954, 2001. BD0058 H.Park, K.Zhang, Y.Ren, S.Nadji, N.Sinha, J.-S.Taylor, C.Kang Crystal Structure of a DNA Decamer Containing a cys-syn Thymine-dimer Proc.Nat.Acad.Sci.USA, 99, 15965-15970, 2002. BDBP23 F.Han, W.Watt, D.J.Duchamp, L.Callahan, F.J.Kezdy, K.Agarwal Molecular Structure of Deoxycytidyl-3'-Methylphosphonate (RP) 5'-Deoxyguanidine, d[Cp(CH3)G]. A Neutral Dinucleotide with Watson-Crick Base Pairing and a Right Handed Helical Twist Nucleic Acids Res., 18, 2759-2767, 1990. BDFP24 W.B.T.Cruse, S.A.Salisbury, T.Brown, R.Cosstick, F.Eckstein, O.Kennard Chiral Phosphorothioate Analogues of B-DNA: The Crystal Structure of Rp-d(Gp(S) CpGp(S)CpGp(S)C) J.Mol.Biol., 192, 891-905, 1986. BDJB27 U.Heinemann, M.Hahn C-C-A-G-G-C-M5C-T-G-G; Helical Fine Structure, Hydration, and Comparison with C-C-A-G-G-C-C-T-G-G J.Biol.Chem., 267, 7332-7341, 1992. ---------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:26:23 2004 CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BDJB43 A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson The Structure of the B-DNA Decamer C-C-A-A-C-I-T-T-G-G in Two Different Space Groups: Conformational Flexibility of B- DNA Biochemistry, 32, 1373-1389, 1993. BDJB44 A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson The Structure of the B-DNA Decamer C-C-A-A-C-I-T-T-G-G in Two Different Space Groups: Conformational Flexibility of B- DNA Biochemistry, 32, 1373-1389, 1993. BDJB48 I.Baikalov, K.Grzeskowiak, K.Yanagi, J.Quintana, R.E.Dickerson The Crystal Structure of the Trigonal Decamer C-G-A-T-C-G- 6meA-T-C-G: A B-DNA Helix with 10.6 Base-Pairs per Turn J.Mol.Biol., 231, 768-784, 1993. BDJB49 M.Hahn, U.Heinemann DNA Helix Structure and Refinement Algorithm: Comparison of Models for d( CCAGGCM==5==CTGG) Derived from NUCLSQ, TNT, and X-PLOR Acta Crystallogr.,Sect.D, 49, 468-477, 1993. BDJB50 M.Hahn, U.Heinemann DNA Helix Structure and Refinement Algorithm: Comparison of Models For d( CCAGGCM==5==CTGG) Derived From NUCLSQ, TNT, and X-PLOR Acta Crystallogr.,Sect.D, 49, 468-477, 1993. BDJB57 L.A.Lipscomb, M.E.Peek, M.L.Morningstar, S.M.Verghis, E.M.Miller, A.Rich, J.M.Essigmann, L.D.Williams X-Ray Structure of a DNA Decamer Containing 7, 8-Dihydro-8- Oxoguanine Proc.Nat.Acad.Sci.USA, 3, 719-723, 1995. BDJB77 M.Shatzky-Schwartz, N.D.Arbuckle, M.Eisenstein, D.Rabinovich, A.Bareket-Samish, T.E.Haran, B.F.Luisi, Z.Shakked X-ray and Solution Studies of DNA Oligomers and Implications for the Structural Basis of A-Tract-Dependent Curvature J.Mol.Biol., 267, 595-623, 1997. ---------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:26:23 2004 CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BDJS30 Y.-G.Gao, G.A.Van Der Marel, J.H.Van Boom, A.H.-J.Wang Molecular Structure of a DNA Decamer Containing an Anti- Cancer Nucleoside Arabinosylcytosine: Conformational Perturbation By Arabinosylcytosine in B-DNA Biochemistry, 30, 9922-9931, 1991. BDLB03 A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson Reversible Bending and Helix Geometry in a B-DNA Dodecamer: CGCGAATTBrCGCG J.Biol.Chem., 257, 14686-14707, 1982. BDLB04 A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson Reversible Bending and Helix Geometry in a B-DNA Dodecamer: CGCGAATTBrCGCG J.Biol.Chem., 257, 14686-14707, 1982. BDLB13 C.A.Frederick, G.J.Quigley, G.A.Van Der Marel, J.H.Van Boom, A.H.-J.Wang, A.Rich Methylation of the Ecori Recognition Site Does not Alter DNA Conformation. The Crystal Structure of d(CGCGAm6ATTCGCG) at 2.0 Angstroms Resolution J.Biol.Chem., 263, 17872-17879, 1988. BDLB40 J.C.Xuan, I.T.Weber Crystal Structure of a B-DNA Dodecamer Containing Inosine, d(CGCIAATTCGCG), at 2.4 Angstroms Resolution and Its Comparison with Other B-DNA Dodecamers Nucleic Acids Res., 20, 5457-5464, 1992. BDLB72 B.L.Partridge, S.A.Salisbury n.a. To be Published, n.a., n.a.-n.a., 1996. BDLB73 B.L.Partridge, S.A.Salisbury n.a. To be Published, n.a., n.a.-n.a., 1996. ---------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:26:23 2004 CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BDLB74 B.L.Partridge, S.A.Salisbury n.a. To be Published, n.a., n.a.-n.a., 1996. BDLB76 M.Shatzky-Schwartz, N.D.Arbuckle, M.Eisenstein, D.Rabinovich, A.Bareket-Samish, T.E.Haran, B.F.Luisi, Z.Shakked X-ray and Solution Studies of DNA Oligomers and Implications for the Structural Basis of A-Tract-Dependent Curvature J.Mol.Biol., 267, 595-623, 1997. BDLB82 M.Shatzky-Schwartz, N.D.Arbuckle, M.Eisenstein, D.Rabinovich, A.Bareket-Samish, T.E.Haran, B.F.Luisi, Z.Shakked X-ray and Solution Studies of DNA Oligomers and Implications for the Structural Basis of A-Tract-Dependent Curvature J.Mol.Biol., 267, 595-623, 1997. BDLB83 C.Mayer-Jung, D.Moras, Y.Timsit Effect of Cytosine Methylation on DNA-DNA Recognition at CpG Steps J.Mol.Biol., 270, 328-335, 1997. BDLB84 I.Berger, V.Tereshko, H.Ikeda, V.E.Marquez, M.Egli Crystal Structures of B-DNA with Incorporated 2'-Deoxy-2'- Fluoro-Arabino- Furanosyl Thymines: Implications of Conformational Preorganization for Duplex Stability Nucleic Acids Res., 26, 2473-2480, 1998. BDLB85 I.Berger, V.Tereshko, H.Ikeda, V.E.Marquez, M.Egli Crystal Structures of B-DNA with Incorporated 2'-Deoxy-2'- Fluoro-Arabino- Furanosyl Thymines: Implications of Conformational Preorganization for Duplex Stability Nucleic Acids Res., 26, 2473-2480, 1998. BDLS67 T.J.Boggon, E.L.Hancox, K.E.McAuley-Hecht, B.A.Connolly, W.N.Hunter, T.Brown, R.T.Walker, G.A.Leonard The Crystal Structure Analysis of d(CGCGAASSCGCG)2: A Synthetic DNA Dodecamer Duplex Containing Four 4'-Thio-2'- deoxythymidine Nucleotides Nucleic Acids Res., 24, 951-961, 1996. ---------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:26:23 2004 CITATIONS FOR MODIFIED B-DNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BDLS79 S.Portmann, K.-H.Altmann, N.Reynes, M.Egli Crystal Structures of Oligodeoxyribonucleotides Containing 6'-alpha-Methyl and 6'-alpha-Hydroxy Carbocyclic Thymidines J.Am.Chem.Soc., 119, 2396-2403, 1997. BDLS80 S.Portmann, K.-H.Altmann, N.Reynes, M.Egli Crystal Structures of Oligodeoxyribonucleotides Containing 6'-alpha-Methyl and 6'-alpha-Hydroxy Carbocyclic Thymidines J.Am.Chem.Soc., 119, 2396-2403, 1997. UD0005 C.L.Kielkopf, K.E.Erkkila, B.P.Hudson, J.K.Barton, D.C.Rees Structure of a photoactive rhodium complex intercalated into DNA Nat.Struct.Biol., 7, 117-121, 2000. UDIB70 W.Shepard, W.B.T.Cruse, R.Fourme, E.delaFortelle, T.Prange A zipper-like duplex in DNA: The crystal structure of d(GCGAAAGCT) at 2.1 A resolution Structure (London), 6, 849-861, 1998. ---------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:26:23 2004