CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BD0006 D.Vlieghe, J.P.Turkenburg, L.Van Meervelt B-DNA at Atomic Resolution Reveals Extended Hydration Patterns Acta Crystallogr., Sect.D, 55, 1495-1502, 1999. BD0008 T.K.Chiu, M.Kaczor-Grzeskowiak, R.E.Dickerson Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C- G-A-A-T-T-C-G-C-G J.Mol.Biol., 292, 589-608, 1999. BD0014 J.Liu, J.A.Subirana Structure of d(CGCGAATTCGCG) in the presence of Ca(2+) ions J.Biol.Chem., 274, 24749-24752, 1999. BD0016 M.Soler-Lopez, L.Malinina, J.Liu, T.Huynh-Dinh, J.A.Subirana Water and ions in a high resolution structure of B-DNA J.Biol.Chem., 274, 23683-23686, 1999. BD0017 S.Rhee, Z.-J.Han, K.Liu, H.T.Miles, D.R.Davies Structure of a triple helical DNA with a triplex-duplex junction Biochemistry, 38, 16810-16815, 1999. BD0018 G.Minasov, V.Tereshko, M.Egli Atomic-resolution Crystal Structures of B-DNA Reveal Specific Influences of Divalent Metal Ions on Conformation and Packing J.Mol.Biol., 291, 83-99, 1999. BD0019 G.Minasov, V.Tereshko, M.Egli Atomic-resolution Crystal Structures of B-DNA Reveal Specific Influences of Divalent Metal Ions on Conformation and Packing J.Mol.Biol., 291, 81-n.a., 1999. ---------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:26:25 2004 CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BD0020 G.Minasov, V.Tereshko, M.Egli Atomic-resolution Crystal Structures of B-DNA Reveal Specific Influence of Divalent Metal Ions on Conformation and Packing J.Mol.Biol., 291, 83-n.a., 1999. BD0022 Y.Timsit, E.Vilbois, D.Moras Base-Pairing Shift in the Major Groove of (CA)n Tracts by B- DNA Crystal Structures Nature, 354, 167-170, 1991. BD0027 Y.-G.Gao, H.Robinson, R.Sanishvili, A.Joachimiak, A.H.- J.Wang Structure and recognition of sheared tandem G.A base pairs associated with Human centromere DNA sequence at atomic resolution Biochemistry, 38, 16452-16460, 1999. BD0032 E.M.Johansson, G.Parkinson, S.Neidle A New Crystal Form for the Dodecamer C-G-C-G-A-A-T-T-C-G-C- G: Symmetry Effects on Sequence-dependent DNA Structure J.Mol.Biol., 300, 551-561, 2000. BD0037 M.Soler-Lopez, L.Malinina, J.A.Subirana Solvent organization in an oligonucleotide crystal: the structure of d(GCGAATTCG)2 at atomic resolution J.Biol.Chem., 275, 23034-23044, 2000. BD0056 K.Uytterhoeven, L.Van Meervelt A Triple Helical Fragment Containing a T.AT triplet at 2.56 Angstroms Resolution. To be Published, n.a., n.a.-n.a., n.a.. BD0061 E.Freisinger, A.Fernandes, A.P.Grollman, C.F.Kisker Crystallographic Characterization of an Exocyclic DNA Adduct: 3,N4-etheno-2'-deoxycytidine in the Dodecamer 5'- CGCGAATT(ethenoC)GCG-3' J.Mol.Biol., 329, 685-697, 2003. ---------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:26:25 2004 CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- BD0069 N.Valls, I.Uson, C.Gouyette, J.A.Subirana Nanostructures based on nickel-guanine interactions: a DNA cube. To be Published, n.a., n.a.-n.a., n.a.. BD0070 D.B.Huang, C.B.Phelps, G.Ghosh Crystal structure of a free kB DNA: Calcium ion competes with NF-kB for DNA binding TO BE PUBLISHED, n.a., n.a.-n.a., n.a.. BDF062 L.W.Tari, A.S.Secco Base-Pair Opening and Spermine Binding-B-DNA Features Displayed in the Crystal Structure of a Gal Operon Fragment: Implications for Protein-DNA Recognition Nucleic Acids Res., 23, 2065-2073, 1995. BDF068 M.C.Wahl, S.T.Rao, M.Sundaralingam Crystal Structure of the B-DNA Hexamer d(CTCGAG): Model for a A-to-B Transition Biophys.J., 70, 2857-2866, 1996. BDL021 J.Aymani, M.Coll, G.A.Van Der Marel, J.H.Van Boom, A.H.- J.Wang, A.Rich Molecular Structure of Nicked DNA: A Substrate for DNA Repair Enzymes Proc.Nat.Acad.Sci.USA, 87, 2526-2530, 1990. BDL032 J.Aymani, M.Coll, G.A.Van Der Marel, J.H.Van Boom, A.H.- J.Wang, A.Rich Molecular Structure of Nicked DNA: A Substrate for DNA Repair Enzymes Proc.Nat.Acad.Sci.USA, 87, 2526-2530, 1990. BDL034 Y.Timsit, E.Vilbois, D.Moras Base-Pairing Shift in the Major Groove of (CA)n Tracts by B- DNA Crystal Structures Nature, 354, 167-170, 1991. ---------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:26:25 2004 CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- DD0062 A.Adams, J.M.Guss, W.A.Denny, L.P.Wakelin Structure of 9-amino-[N-(2-dimethylamino)propyl]acridine-4- carboxamide bound to d(CGTACG)(2): a comparison of structures of d(CGTACG)(2) complexed with intercalatorsin the presence of cobalt. Acta Crystallogr., Sect.D, 60, 823-828, 2004. UD0012 M.Soler-Lopez, L.Malinina, V.Tereshko, V.Zarytova, J.A.Subirana Interaction of Zinc Ions with d(CGCAATTGCG) in a 2.9 A Resolution X-ray Structure J.BIOL.INORG.CHEM., 7, 533-538, 2002. UD0023 C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Texieira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden Structural Analysis of two Holliday junctions formed by the sequences TCGGTACCGA and CCGGTACCGG To be Published, n.a., n.a.-n.a., n.a.. UD0024 C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Texieira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden Structural Analysis of two Holliday Junctions formed by the sequences TCGGTACCGA and CCGGTACCGG To be Published, n.a., n.a.-n.a., n.a.. UD0025 C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Teixeira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden Structural analysis of two Holliday junctions formed by the sequences TCGGTACCGA and CCGGTACCGG To be Published, n.a., n.a.-n.a., n.a.. UD0026 C.J.Cardin, J.H.Thorpe, B.C.Gale, S.C.M.Teixeira Strontium, a MAD taerget for the DNA Holliday junction To be published, n.a., n.a.-n.a., n.a.. UD0028 F.A.Hays, J.M.Vargason, P.S.Ho Effect of Sequence on the Conformation of DNA Holliday Junctions Biochemistry, 42, 9586-9597, 2003. ---------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:26:25 2004 CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- UD0030 F.A.Hays, J.M.Vargason, P.S.Ho Effect of Sequence on the Conformation of DNA Holliday Junctions Biochemistry, 42, 9586-9597, 2003. UDH052 S.A.Salisbury, S.E.Wilson, H.R.Powell, O.Kennard, P.Lubini, G.M.Sheldrick, N.Escaja, E.Alazzouzi, A.Grandas, E.Pedroso The Bi-Loop, a New General Four-Stranded DNA Motif Proc.Nat.Acad.Sci.USA, 94, 5515-5518, 1997. UDI030 L.Van Meervelt, D.Vlieghe, A.Dautant, B.Gallois, G.Precigoux, O.Kennard High-Resolution Structure of a DNA Helix Forming (C.G)*G Base Triplets Nature, 374, 742-744, 1995. UDI047 B.H.M.Mooers, P.S.Ho Crystal Structure of the B-DNA Nonamer d(GCGTACGCG) with a Novel d[G*(G.C)] Base-triplet Involving the Minor Groove To be Published, n.a., n.a.-n.a., 1996. UDJ031 N.Spink, C.M.Nunn, J.Vojtechovsky, H.M.Berman, S.Neidle Crystal Structure of a DNA Decamer Showing a Novel Pseudo Four-Way Helix-Helix Junction Proc.Nat.Acad.Sci.USA, 92, 10767-10771, 1995. UDJ048 H.X.Qiu, J.C.Dewan, N.C.Seeman A DNA Decamer with a Sticky End: The Crystal Structure of d- CGACGATCGT J.Mol.Biol., 267, 881-898, 1997. UDJ049 D.Vlieghe, L.Van Meervelt, A.Dautant, B.Gallois, G.Precigoux, O.Kennard Parallel and Antiparallel (G.GC)2 Triple Helix Fragments in a Crystal Structure Science, 273, 1702-1705, 1996. ---------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:26:25 2004 CITATIONS FOR B-DNA'S WITH SPECIAL FEATURES ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- UDJ060 H.X.Qiu, J.C.Dewan, N.C.Seeman A DNA Decamer with a Sticky End: The Crystal Structure of d- CGACGATCGT J.Mol.Biol., 267, 881-898, 1997. UDM010 L.Joshua-Tor, F.Frolow, E.Appella, H.Hope, D.Rabinovich, J.L.Sussman The Three-Dimensional Structures of Bulge-Containing DNA Fragments J.Mol.Biol., 225, 397-431, 1992. UDM017 L.Joshua-Tor, F.Frolow, E.Appella, H.Hope, D.Rabinovich, J.L.Sussman The Three-Dimensional Structures of Bulge-Containing DNA Fragments J.Mol.Biol., 225, 397-431, 1992. UDO009 M.Miller, R.W.Harrison, A.Wlodawer, E.Appella, J.L.Sussman Crystal Structure of 15-MER DNA Duplex Containing Unpaired Bases Nature, 334, 85-86, 1988. ---------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:26:25 2004