CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- 1T4L H.Wu, A.Henras, G.Chanfreau, J.Feigon Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. To be Published, n.a., n.a.-n.a., n.a.. PR0005 A.R.Ferre-D'Amare, K.Zhou, J.A.Doudna Crystal Structure of a Hepatitis Delta Virus Ribozyme Nature, 395, 567-574, 1998. PR0006 R.Sankaranarayanan, A.-C.Dock-Bregeon, P.Romby, J.Caillet, M.Springer, B.Rees, C.Ehresmann, B.Ehresmann, D.Moras The Structure of Threonyl-tRNA Synthetase-tRNA(Thr) Complex Enlightens its Repressor Activity and Reveals an Essential Zinc Ion in the Active Site Cell (Cambridge,Mass.), 97, 371-381, 1999. PR0012 R.K.Arni, L.Watanabe, R.J.Ward, R.J.Kreitman, K.Kumar, F.G.Walz Jr. Three-Dimensional structure of ribonuclease T1 complexed with an isosteric phosphonate analogue of GpU: Alternate substrate binding modes and catalysis Biochemistry, 38, 2452-2461, 1999. PR0013 L.F.Silvian, J.Wang, T.A.Steitz Insights into editing from an Ile-tRNA synthetase structure with tRNA(Ile) and Mupirocin Science, 285, 1074-1077, 1999. PR0014 L.F.Silvian, J.Wang, T.A.Steitz Insights into editing from an Ile-tRNA synthetase structure with tRNA(Ile) and Mupirocin Science, 285, 1074-1077, 1999. PR0019 S.Eiler, A.Dock-Bregeon, L.Moulinier, J.C.Thierry, D.Moras Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step. EMBO J., 18, 6532-6541, 1999. ---------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PR0023 C.Briand, A.Poterszman, S.Eiler, G.Webster, J.-C.Thierry, D.Moras An intermediate step in the recognition of tRNA(Asp) by aspartyl-tRNA synthetase J.Mol.Biol., 299, 1051-1060, 2000. PR0024 Y.Goldgur, L.Mosyak, L.Reshetnikova, V.Ankilova, M.Safro The crystal structure of phenylalanyl-tRNA synthetase from Thermus thermophilus complexed with cognate tRNAPhe Structure, 5, 59-68, 1997. PR0025 L.D.Sherlin, T.L.Bullock, K.J.Newberry, R.S.A.Lipman, Y.- M.Hou, B.Beijer, B.S.Sproat, J.J.Perona Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases J.Mol.Biol., 299, 431-446, 2000. PR0026 L.D.Sherlin, T.L.Bullock, K.J.Newberry, R.S.A.Lipman, Y.- M.Hou, B.Beijer, B.S.Sproat, J.J.Perona Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases J.Mol.Biol., 299, 431-446, 2000. PR0027 T.L.Bullock, L.D.Sherlin, J.J.Perona Tertiary core rearrangements in a tight binding transfer RNA aptamer Nat.Struct.Biol., 7, 497-504, 2000. PR0029 S.Fukai, O.Nureki, S.Sekine, A.Shimada, J.Tao, D.G.Vassylyev, S.Yokoyama Structural Basis for Double-Sieve Discrimination of L- Valine from L-Isoleucine and L-Threonine by the Complex of tRNA(val) and Valyl-tRNA Synthetase Cell (Cambridge,Mass.), 103, 793-803, 2000. PR0029 S.Fukai, O.Nureki, S.Sekine, A.Shimada, J.Tao, D.G.Vassylyev, S.Yokoyama Structural Basis for Double-Sieve Discrimination of L- Valine from L-Isoleucine and L-Threonine by the Complex of tRNA(val) and Valyl-tRNA Synthetase Cell (Cambridge,Mass.), 103, 793-803, 2000. ---------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PR0030 B.Delagoutte, D.Moras, J.Cavarelli tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding Embo J., 19, 5599-5610, 2000. PR0031 B.Delagoutte, D.Moras, J.Cavarelli tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding Embo J., 19, 5599-5610, 2000. PR0032 L.F.Silvian, J.Wang, T.A.Steitz Insights into editing from an ILE-TRNA synthetase structure with TRNA(ILE) and mupirocin Science, 285, 1074-1077, 1999. PR0035 S.Sekine, O.Nureki, A.Shimada, D.G.Vassylyev, S.Yokoyama Structural Basis for Anticodon Recognition by Discriminating Glutamyl-tRNA Synthetase Nat.Struct.Biol., 8, 203-206, 2001. PR0049 L.Moulinier, S.Eiler, G.Eriani, J.Gangloff, J.C.Thierry, K.Gabriel, W.H.McClain, D.Moras The Structure of an AspRS-tRNAAsp Complex Reveals a tRNA Dependent Control Mechanism Embo J., 20, 5290-5301, 2001. PR0051 X.Yang, T.Gerczei, L.Glover, C.C.Correll Crystal Structures of Restrictocin-Inhibitor Complexes with Implications for RNA Recognition and Base Flipping Nat.Struct.Biol., 8, 968-973, 2001. PR0052 X.Yang, T.Gerczei, L.Glover, C.C.Correll Crystal Structures of Restrictocin-Inhibitor Complexes with Implications for RNA Recognition and Base Flipping Nat.Struct.Biol., 8, 968-973, 2001. ---------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PR0053 X.Yang, T.Gerczei, L.Glover, C.C.Correll Crystal Structures of Restrictocin-Inhibitor Complexes with Implications for RNA Recognition and Base Flipping Nat.Struct.Biol., 8, 968-973, 2001. PR0056 A.Yaremchuk, M.Tukalo, M.Grotli, S.Cusack A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase J.Mol.Biol., 309, 989-1002, 2001. PR0057 A.Yaremchuk, M.Tukalo, M.Grotli, S.Cusack A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase J.Mol.Biol., 309, 989-1002, 2001. PR0059 E.Schmitt, M.Panvert, S.Blanquet, Y.Mechulam Crystal Structure of Methionyl-Trnafmet Transformylase Complexed with the Initiator Formyl-Methionyl-Trnafmet Embo J., 17, 6819-6826, 1998. PR0060 C.Hoang, A.R.Ferre-D'Amare Cocrystal Structure of a tRNA Psi55 Pseudouridine Synthase: Nucleotide Flipping by an RNA-Modifying Enzyme Cell (Cambridge,Mass.), 107, 929-939, 2001. PR0064 A.Torres-Larrios, A.C.Dock-Bregeon, P.Romby, B.Rees, R.Sankaranarayanan, J.Caillet, M.Springer, C.Ehresmann, B.Ehresmann, D.Moras Structural Basis of Translational Control by Escherichia coli threonyl tRNA Synthetase Nat.Struct.Biol., 9, 343-347, 2002. PR0069 S.Fukai, O.Nureki, S.-I.Sekine, A.Shimada, D.G.Vassylyev, S.Yokoyama Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase RNA, 9, 100-111, 2003. ---------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PR0086 Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3 Cell (Cambridge,Mass.), 111, 733-745, 2002. PR0087 Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3 Cell (Cambridge,Mass.), 111, 733-745, 2002. PR0088 Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3 Cell (Cambridge,Mass.), 111, 733-745, 2002. PR0089 S.Sekine, O.Nureki, D.Y.Dubois, S.Bernier, R.Chenevert, J.Lapointe, D.G.Vassylyev, S.Yokoyama ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J., 22, 676-688, 2003. PR0090 S.Sekine, O.Nureki, D.Y.Dubois, S.Bernier, R.Chenevert, J.Lapointe, D.G.Vassylyev, S.Yokoyama ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J., 22, 676-688, 2003. PR0091 D.J.O'Farrell, R.Trowbridge, D.J.Rowlands, J.Jaeger Substrate Complexes of Hepatitis C virus RNA Polymerase (HC- J4): Structural Evidence for Nucleotide Import and De-novo Initiation. J.MOL.BIOL., 326, 1025-1035, 2003. PR0092 T.Kobayashi, O.Nureki, R.Ishitani, A.Yaremchuk, M.Tukalo, S.Cusack, K.Sakamoto, S.Yokoyama Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion NAT.STRUCT.BIOL., 10, 425-432, 2003. ---------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PR0093 R.Ishitani, O.Nureki, N.Nameki, N.Okada, S.Nishimura, S.Yokoyama Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme Cell (Cambridge,Mass.), 113, 383-394, 2003. PR0095 T.L.Bullock, N.Uter, T.A.Nissan, J.J.Perona Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants J.Mol.Biol., 328, 395-408, 2003. PR0096 T.L.Bullock, N.Uter, T.A.Nissan, J.J.Perona Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants J.Mol.Biol., 328, 395-408, 2003. PR0101 W.Xie, X.Liu, R.H.Huang Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate Nat.Struct.Biol., 10, 781-788, 2003. PR0102 W.Xie, X.Liu, R.H.Huang Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate Nat.Struct.Biol., 10, 781-788, 2003. PR0105 H.Pan, S.Agarwalla, D.T.Moustakas, J.Finer-Moore, R.M.Stroud Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA Recognition Through a Combination of Rigid Docking and Induced Fit Proc.Nat.Acad.Sci.USA, 100, 12648-12653, 2003. PRV007 A.E.Hodel, P.D.Gershon, F.A.Quiocho Structural Basis for Sequence Non-Specific Recognition of 5' Capped mRNA by a CAP-Modifying Enzyme Molecular Cell, 1, 443-447, 1998. ---------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PRV022 J.Jaeger, T.Restle, T.A.Steitz The Structure of HIV-1 Reverse Transcriptase Complexed with an RNA Pseudoknot Inhibitor Embo J., 17, 4535-4542, 1998. PTE001 S.Cusack, A.Yaremchuk, I.Krikliviy, M.Tukalo tRNA(PRO) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase Structure (London), 6, 101-108, 1998. PTE002 S.Cusack, A.Yaremchuk, I.Krikliviy, M.Tukalo tRNA(PRO) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase Structure (London), 6, 101-108, 1998. PTE003 V.L.Rath, L.F.Silvian, B.Beijer, B.S.Sproat, T.A.Steitz How Glutaminyl-tRNA Synthetase Selects Glutamine Structure (London), 6, 439-449, 1998. PTR001 M.A.Rould, J.J.Perona, D.Soell, T.A.Steitz Structure of E.Coli Glutaminyl-tRNA Synthetase Complexed with tRNA(Gln) and ATP at 2.8 Angstroms Resolution Science, 246, 1135-1142, 1989. PTR002 J.J.Perona, M.A.Rould, T.A.Steitz Structural Basis for Transfer RNA Aminoaceylation by Escherichia Coli Glutaminyl-tRNA Synthetase Biochemistry, 32, 8758-8771, 1993. PTR003 M.A.Rould, J.J.Perona, T.A.Steitz Structural Basis of Anticodon Loop Recognition by Glutaminyl-tRNA Synthetase Nature, 352, 213-218, 1991. ---------------------------------------------------------------------- Page 7 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PTR004 V.Biou, A.Yaremchuk, M.Tukalo, S.Cusack The 2.9 Angstroms Crystal Structure of T.Thermophilus Seryl- tRNA Synthetase Complexed with tRNA(Ser) Science, 263, 1404-1410, 1994. PTR005 M.Ruff, S.Krishnaswamy, M.Boeglin, A.Poterszman, A.Mitschler, A.Podjarny, B.Rees, J.C.Thierry, D.Moras Class II Aminoacyl Transfer RNA Synthetases: Crystal Structure of Yeast Aspartyl-tRNA Synthetase Complexed with tRNA(Asp) Science, 252, 1682-1689, 1991. PTR007 S.Cusack, A.Yaremchuk, M.Tukalo The Crystal Structure of the Ternary Complex of T.Thermophilus Seryl-tRNA Synthetase with tRNA(Ser) and a Seryl-Adenylate Analogue Reveals a Conformational Switch in the Active Site Embo J., 15, 2834-2842, 1996. PTR008 J.Cavarelli, G.Eriani, B.Rees, M.Ruff, M.Boeglin, A.Mitschler, F.Martin, J.Gangloff, J.C.Thierry, D.Moras The Active Site of Yeast Aspartyl-tRNA Synthetase: Structural and Functional Aspects of the Aminoacylation Reaction Embo J., 13, 327-337, 1994. PTR009 J.G.Arnez, T.A.Steitz Crystal Structures of Three Misacylating Mutants of E. Coli Glutaminyl-tRNA Synthetase Complexed with tRNA(Gln) and ATP Biochemistry, 35, 14725-14733, 1996. PTR010 J.G.Arnez, T.A.Steitz Crystal Structures of Three Misacylating Mutants of E. Coli Glutaminyl-tRNA Synthetase Complexed with tRNA(Gln) and ATP Biochemistry, 35, 14725-14733, 1996. PTR011 J.G.Arnez, T.A.Steitz Crystal Structures of Three Misacylating Mutants of E. Coli Glutaminyl-tRNA Synthetase Complexed with tRNA-Gln and ATP Biochemistry, 35, 14725-14733, 1996. ---------------------------------------------------------------------- Page 8 created by the NDB Project on Wed May 26 14:27:17 2004 CITATIONS FOR PROTEIN/RNA (ENZYMES) ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- PTR014 S.Cusack, A.Yaremchuk, M.Tukalo The Crystal Structure of T.Thermophilus Lysyl-tRNA Synthetase complexed with E.Coli tRNA(Lys) and a T.Thermophilus tRNA(Lys) Transcript: Anticodon Recognition and Conformational Changes Upon Binding of a Lysyl- Adenylate Analogue Embo J., 15, 6321-6334, 1996. PTR015 S.Cusack, A.Yaremchuk, M.Tukalo The Crystal Structure of T.Thermophilus Lysyl-tRNA Synthetase complexed with E.Coli tRNA(Lys) and a T.Thermophilus tRNA(Lys) Transcript: Anticodon Recognition and Conformational Changes Upon Binding of a Lysyl- Adenylate Analogue Embo J., 15, 6321-6334, 1996. ---------------------------------------------------------------------- Page 9 created by the NDB Project on Wed May 26 14:27:17 2004