CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- 1R7W Z.Du, N.B.Ulyanov, J.Yu, R.Andino, T.L.James NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,). Biochemistry, 43, 5757-5771, 2004. 1R7Z Z.Du, N.B.Ulyanov, J.Yu, R.Andino, T.L.James NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,). Biochemistry, 43, 5757-5771, 2004. AR0040 K.Shi, B.Pan, M.Sundaralingam The crystal structure of an alternating RNA heptamer r(GUAUACA) forming a six base-paired duplex with 3'-end adenine overhangs Nucleic Acids Res., 31, 1392-1397, 2003. DR0004 D.Sussman, C.Wilson A water channel in the core of the vitamin B(12) RNA aptamer Structure Fold Des., 8, 719-727, 2000. DRB002 S.Neidle, G.Taylor, M.Sanderson, H.-S.Shieh, H.M.Berman A 1:2 Crystalline Complex of ApA:proflavine: A Model for Binding to Single-Stranded Regions in RNA Nucleic Acids Res., 5, 4417-4422, 1978. DRB003 N.C.Seeman, R.O.Day, A.Rich Nucleic Acid-Mutagen Interactions: Crystal Structure of Adenylyl-3',5'-Uridine Plus 9-Aminoacridine Nature, 253, 324-326, 1975. TR0001 H.Shi, P.B.Moore The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited RNA, 6, 1091-1105, 2000. ---------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- TR0002 L.Jovine, S.Djordjevic, D.Rhodes The crystal structure of yeast phenylalanine tRNA a 2.0 A resolution: partial cleavage by Mg2+ in 15 year old crystals J.Mol.Biol., 301, 401-414, 2000. TR0003 P.Benas, G.Bec, G.Keith, R.Marquet, C.Ehresmann, B.Ehresmann, P.Dumas The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop RNA, 6, 1347-1355, 2000. TR0004 N.E.Mikkelsen, K.Johansson, A.Virtanen, L.A.Kirsebom Aminoglycoside Binding Displaces a Divalent Metal Ion in a tRNA-neomycin B Complex Nat.Struct.Biol., 8, 510-514, 2001. UR0002 C.C.Correll, A.Munishkin, Y-L.Chan, Z.Ren, I.G.Wool, T.A.Steitz Crystal Structure of the Ribosomal RNA Domain Essential for Binding Elongation Factors Proc.Nat.Acad.Sci.USA, 95, 13436-13441, 1998. UR0004 L.Su, L.Chen, M.Egli, J.M.Berger, A.Rich Minor Groove RNA Triplex in the Crystal Structure of a Ribosomal Frameshifting Viral Pseudoknot Nat.Struct.Biol., 6, 285-292, 1999. UR0006 C.C.Correll, I.G.Wool, A.Munishkin The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution J.Mol.Biol., 292, 275-287, 1999. UR0007 C.C.Correll, I.G.Wool, A.Munishkin The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution J.Mol.Biol., 292, 275-287, 1999. ---------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- UR0008 D.Sussman, J.C.Nix, C.Wilson The structural basis for molecular recognition by the vitamin B12 RNA aptamer Nat.Struct.Biol., 7, 53-57, 2000. UR0010 J.B.Murray, H.Szoke, A.Szoke, W.G.Scott Capture and Visualization of a Catalytic RNA Enzyme-Product Complex Using Crystal Lattice Trapping and X-Ray Holographic Reconstruction Mol. Cell, 5, 279-287, 2000. UR0011 C.Baugh, D.Grate, C.Wilson 2.8 A crystal structure of the malachite green aptamer J.Mol.Biol., 301, 117-128, 2000. UR0012 K.Juneau, E.R.Podell, D.J.Harrington, T.R.Cech Structural Basis of the Enhanced Stability of a Mutant Ribozyme Domain and a Detailed View of RNA-Solvent Interactions Structure, 9, 221-231, 2001. UR0013 B.Guillot, C.Lecomte, A.Cousson, C.Scherf, C.Jelsch High Resolution Neutron Structure of Nicotinamide Adenine Dinucleotide Acta Crystallogr., Sect.D, 57, 981-989, 2001. UR0015 E.Ennifar, P.Walter, B.Ehresmann, C.Ehresmann, P.Dumas Crystal Structures of Coaxially-Stacked Kissing Complexes of the HIV-1 RNA Dimerization Initiation Site Nat.Struct.Biol., 8, 1064-1068, 2001. UR0016 E.Ennifar, P.Walter, B.Ehresmann, C.Ehresmann, P.Dumas Crystal Structures of Coaxially-Stacked Kissing Complexes of the HIV-1 RNA Dimerization Initiation Site Nat.Struct.Biol., 8, 1064-1068, 2001. ---------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- UR0017 E.Ennifar, P.Walter, B.Ehresmann, C.Ehresmann, P.Dumas Crystal Structures of Coaxially-Stacked Kissing Complexes of the HIV-1 RNA Dimerization Initiation Site Nat.Struct.Biol., 8, 1064-1068, 2001. UR0018 J.S.Kieft, K.Zhou, A.Grech, R Jubin, J.A.Doudna Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation Nat.Struct.Biol., 9, 370-374, 2002. UR0019 L.Zhang, J.A.Doudna Structural Insights into Group II Intron Catalysis and Branch-site Selection Science, 295, 2084-2088, 2002. UR0020 M.Egli, G.Minasov, L.Su, A.Rich Metal Ions and Flexibility in Viral RNA Pseudoknot at Atomic Resolution Proc.Nat.Acad.Sci.USA, 99, 4302-4307, 2002. UR0021 M.Egli, G.Minasov, L.Su, A.Rich Metal Ions and Flexibility in Viral RNA Pseudoknot at Atomic Resolution Proc.Nat.Acad.Sci.USA, 99, 4302-4307, 2002. UR0022 D.J.Battle, J.A.Doudna Specificity of RNA-RNA Helix Recognition Proc.Nat.Acad.Sci.USA, 99, 11676-11681, 2002. UR0026 C.C.Correll, K.Swinger Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 A resolution RNA, 9, 355-363, 2003. ---------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- UR0033 C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan The common and distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure Nucleic Acids Res., 31, 6806-6818, 2003. UR0034 C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan The common and distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure Nucleic Acids Res., 31, 6806-6818, 2003. UR0035 C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan The common and distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure Nucleic Acids Res., 31, 6806-6818, 2003. URB001 R.Parthasarathy, M.Malik, S.M.Fridey X-Ray Structure of a Dinucleoside Monophosphate A2'P5'C that Contains a 2'-5' Link Found in (2'-5')oligo(A)s Induced By Interferons: Single-Stranded Helical Conformation of 2'-5'-Linked Oligonucleotides Proc.Nat.Acad.Sci.USA, 79, 7292-7296, 1982. URB003 H.Einspahr, W.J.Cook, C.E.Bugg Conformational Flexibility in Single-Stranded Oligonucleotides: Crystal Structure of a Hydrated Calcium Salt of Adenylyl-(3'-5')-Adenosine Biochemistry, 20, 5788-5794, 1981. URB008 J.L.Sussman, N.C.Seeman, S.-H.Kim, H.M.Berman Crystal Structure of a Naturally Occurring Dinucleoside Phosphate: Uridylyl 3', 5'-Adenosine Phosphate Models for RNA Chain Folding J.Mol.Biol., 66, 403-421, 1972. URB013 M.Egli, R.V.Gessner, L.D.Williams, G.J. Quigley, G.A.Van Der Marel, J.H.Van Boom, A.Rich, C.A.Frederick Atomic-Resolution Structure of the Cellulose Synthase Regulator Cyclic Diguanylic Acid Proc.Nat.Acad.Sci.USA, 87, 3235-3239, 1990. ---------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- URB014 Y.-C.Liaw, Y.-G.Gao, H.Robinson, G.M.Sheldrick, L.A.J.M.Sleidregt, G.A.Van Der Marel, J.H.Van Boom, A.H.- J.Wang Cyclic Diguanylic Acid Behaves as a Host Molecule for Planar Intercalators FEBS Lett., 264, 223-227, 1990. URB015 Y.-C.Liaw, Y.-G.Gao, H.Robinson, G.M.Sheldrick, L.A.J.M.Sleidregt, G.A.Van Der Marel, J.H.Van Boom, A.H.- J.Wang Cyclic Diguanylic Acid Behaves as a Host Molecule for Planar Intercalators FEBS Lett., 264, 223-227, 1990. URB016 J.Rubin, T.Brennan, M.Sundaralingam Crystal and Molecular Structure of Naturally Occurring Dinucleoside Monophosphate Uridylyl-(3',5')-Adenosine Hemihydrate Conformational Rigidity of the Nucleotide Unit and Models for Polynucloetide Chain Folding Biochemistry, 11, 3112-3118, 1972. URB020 E.Shefter, M.Barlow, R.A.Sparks, K.N.Trueblood The Crystal and Molecular Structure of a Dinucleoside Phosphate: Beta- Adenosine-2'-Beta-Uridine-5'-Phosphoric Acid Acta Crystallogr.,Sect.B, 25, 895-909, 1969. URBP33 B.Hyrup, C.Richert, T.Schulte-Herbrueggen, S.A.Benner, M.Egli X-Ray Crystal Structure of a Dimethylene Sulfone-Bridged Ribonucleotide Dimer in a Single-Stranded State Nucleic Acids Res., 23, 2427-2433, 1995. URC002 D.Suck, P.C.Manor, W.Saenger The Structure of a Trinucleoside Diphosphate: Adenylyl- (3',5')-Adenylyl-(3',5')-Adenosine Hexahydrate Acta Crystallogr.,Sect.B, 32, 1727-1737, 1976. URT068 M.Perbandt, A.Nolte, S.Lorenz, V.A.Erdmann, C.Betzel Crystal Structure of Domain E of Thermus flavus 5S rRNA: A Helical RNA Structure Including a Hairpin Loop FEBS Lett., 429, 211-215, 1998. ---------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:26:50 2004 CITATIONS FOR SINGLE STRANDED RNA'S ---------------------------------------------------------------------- NDB ID Citation ---------------------------------------------------------------------- URX072 S.E.Lietzke, C.L.Barnes, V.F.Malone, J.T.Jones, C.E.Kundrot The Structure of an RNA Pseudoknot Shows 3D Domain Swapping Structure, Motion, Interaction and Expression of Biological Macromolecules, The Proceedings of the Tenth Conversation held at The University-SUNY, Albany NY, June 17-21, 1997, 10, 91-101, 1998. ---------------------------------------------------------------------- Page 7 created by the NDB Project on Wed May 26 14:26:50 2004