DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- 1P96 DNA INTERCALATION 1R4E DNA INTERCALATION DD0001 5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3' INTERCALATION, COVALENT DD0012 5'-D(*CP*GP*TP*AP*CP*G)-3' INTERCALATION, GROOVE BINDER DD0015 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-AMINO-[N- INTERCALATION (2-DIMETHYLAMINO)ETHYL]ACRIDINE-4- CARBOXAMIDE DD0017 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN INTERCALATION, GROOVE BINDER DERIVATIVE DD0018 5'-D(*CP*GP*TP*AP*CP*G)-3', BIS- BIS-INTERCALATION INTERCALATOR D232 DD0020 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3', INTERCALATION, GROOVE BINDER HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE DD0022 5'-D(*CP*GP*CP*(CH2)GP*CP*G)-3', INTERCALATION, COVALENT DOXORUBICIN DD0023 5'-D(*CP*GP*TP*AP*CP*G)-3', ACRIDINE INTERCALATION DERIVATIVE DD0026 5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3', INTERCALATION, GROOVE BINDER PHENAZINE DERIVATIVE DD0028 DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')- INTERCALATION ACRIDINE COMPLEX -------------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DD0029 DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')- INTERCALATION ANTHRACENE-9-10-DIOL COMPLEX DD0030 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' INTERCALATION, COVALENT CROSSLINKED BY PSORALEN DD0031 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' INTERCALATION, COVALENT CROSSLINKED BY PSORALEN DD0032 5'-D(P*GP*(BRO)UP*AP*CP*GC)-3', 5'- INTERCALATION D(*CP*GP*(BRO)UP*AP*CP*G)-3', ACRIDINE DERIVATIVE DD0033 5'-D(P*GP*TP*AP*CP*G)-3', 5'- INTERCALATION D(*CP*GP*TP*AP*CP*G)-3', ACRIDINE DERIVATIVE DD0037 5'- INTERCALATION D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)- 3', ACRIDINE-PEPTIDE DRUG DD0039 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRO)UP*CP*G)- INTERCALATION 3', ACTINOMYCIN D DD0045 5'-D(*CP*GP*TP*AP*CP*G)-3', BIS-DACA BIS-INTERCALATION DD0047 5'-D(*CP*CP*TP*AP*GP*G)-3', CRYPTOLEPINE INTERCALATION DD0048 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-AMINO-N- INTERCALATION [2-(4-MORPHOLINYL)ETHYL]-4- ACRIDINECARBOXAMIDE DD0049 5'- INTERCALATION D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)- 3', acridine derivative DD0051 5'-D(*CP*GP*TP*AP*CP*G)-3', 5-BROMO-N[2- INTERCALATION (DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4- CARBOXAMIDE -------------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DD0054 5'-D(*CP*GP*AP*TP*CP*G)-3' INTERCALATION, MINOR GROOVE BINDER DD0057 ECHINOMYCIN/DNA COMPLEX INTERCALATION DD0062 5'-D(*CP*GP*TP*AP*CP*G)-3', 9-amino-[N- INTERCALATION (2-dimethylamino)proply]-acridine-4- carboxamide DDB003 5'-D(*CP*G)-3', TERPYRIDINE PLATINIUM INTERCALATION/STACKING DDB008 5'-D(*CP*G)-3', DIMETHYLPROFLAVINE INTERCALATION/STACKING DDB009 5'-D(*CP*G)-3', PROFLAVINE INTERCALATION/STACKING DDB033 5'-D(*CP*G)-3', PROFLAVINE,-2C INTERCALATION DDB034 5'-D(*CP*G)-3', PROFLAVINE,-130C INTERCALATION DDD030 5'-D(*CP*GP*CP*G)-3', DITERCALINIUM BIS-INTERCALATION DDDB46 5'-D(*(BR)CP*GP*CP*G)-3', FLEXI-DI BIS-INTERCALATION DDF001 5'-D(*CP*GP*TP*AP*CP*G)-3', DAUNOMYCIN INTERCALATION DDF002 5'-D(*CP*GP*TP*AP*CP*G)-3', ECHINOMYCIN BIS-INTERCALATION -------------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DDF007 5'-D(*CP*GP*TP*AP*CP*G)-3', TRIOSTIN A BIS-INTERCALATION DDF018 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN INTERCALATION DDF019 5'-D(*CP*GP*AP*TP*CP*G)-3', ADRIAMYCIN INTERCALATION DDF020 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN INTERCALATION DDF022 5'-D(*CP*GP*AP*TP*CP*G)-3', 4'- INTERCALATION EPIADRIAMYCIN DDF023 5'-D(*CP*GP*CP*GP*CP*G)-3', INTERCALATION, COVALENT DAUNORUBICIN (DAUNOMYCIN) AND HCHO DDF026 5'-D(*CP*GP*TP*AP*CP*G)-3', MAR70 INTERCALATION DDF028 5'-D(*CP*GP*AP*TP*CP*G)-3', 4-O- INTERCALATION DEMETHYL-11-DEOXYDOXORUBICIN DDF029 5'-D(*CP*GP*AP*TP*CP*G)-3', IDARUBICIN INTERCALATION DDF031 5'-D(*TP*GP*TP*AP*CP*A)-3', DAUNOMYCIN INTERCALATION DDF032 5'-D(*TP*GP*AP*TP*CP*A)-3', DAUNOMYCIN INTERCALATION DDF035 5'-D(*TP*GP*TP*AP*CP*A)-3', 4'- INTERCALATION EPIADRIAMYCIN -------------------------------------------------------------------------------------- Page 4 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DDF036 5'-D(*TP*GP*AP*TP*CP*A)-3', 4'- INTERCALATION EPIADRIAMYCIN DDF038 5'-D(*TP*GP*AP*TP*CP*A)-3', IDARUBICIN INTERCALATION DDF039 5'-D(*CP*GP*GP*CP*CP*G)-3', DAUNOMYCIN INTERCALATION DDF040 5'-D(*TP*GP*GP*CP*CP*A)-3', ADRIAMYCIN INTERCALATION DDF041 5'-D(*CP*GP*TP*AP*CP*G)-3', 3'-DESAMINO- INTERCALATION 3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN DDF044 5'-D(*CP*GP*AP*TP*CP*G)-3', ADRIAMYCIN,- INTERCALATION 160C DDF045 5'-D(*CP*GP*AP*TP*CP*G)-3', DAUNOMYCIN,- INTERCALATION 160C DDF049 5'-D(*TP*GP*AP*TP*CP*A)-3', NOGALAMYCIN INTERCALATION DDF050 5'-D(*CP*GP*AP*TP*CP*G)-3', IDARUBICIN INTERCALATION AND SPERMINE DDF052 5'-D(*TP*GP*AP*TP*CP*A)-3', INTERCALATION NOGALAMYCIN, 150K, PROLSQ REFINEMENT DDF053 5'-D(*CP*GP*TP*AP*CP*G)-3', (S)-3'- INTERCALATION DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)- DOXORUBICIN DDF054 5'-D(*CP*GP*AP*TP*CP*G)-3', (S)-3'- INTERCALATION DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)- DOXORUBICIN -------------------------------------------------------------------------------------- Page 5 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DDF055 5'-D(*CP*GP*AP*TP*CP*G)-3', (R)-3'- INTERCALATION DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)- DOXORUBICIN DDF056 5'-D(*CP*GP*AP*TP*CP*G)-3', 3'-DESAMINO- INTERCALATION 3'-(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN DDF060 5'-D(*CP*GP*AP*TP*CP*G)-3', CU(II)MESO- INTERCALATION (4-N-TETRAMETHYLPYRIDYL)PORPHYRIN DDF061 5'-D(*TP*GP*TP*AP*CP*A)-3', 4'-DEOXY-4'- INTERCALATION IODODOXORUBICIN DDF062 5'-D(*CP*GP*AP*TP*CP*G)-3', 4'-DEOXY-4'- INTERCALATION IODODOXORUBICIN DDF063 5'-D(*TP*GP*AP*TP*CP*A)-3', INTERCALATION NOGALAMYCIN, 150K, SHELXL-93 REFINEMENT DDF064 5'-D(*TP*GP*TP*AP*CP*A)-3', NOGALAMYCIN INTERCALATION DDF065 5'-D(*CP*GP*TP*AP*CP*G)-3', 2'-BROMO-4'- INTERCALATION EPIDAUNORUBICIN DDF066 5'-D(*CP*GP*AP*TP*CP*G)-3', 2'-BROMO-4'- INTERCALATION EPIDAUNORUBICIN DDF067 5'-D(*CP*GP*CP*(CH2-DM8)GP*CP*G)-3' INTERCALATION DDF068 5'-D(*CP*GP*GP*CP*CP*G)-3', 2'-BROMO-4'- INTERCALATION EPIDAUNORUBICIN DDF069 5'-D(*CP*CP*CP*GP*GP*G)-3', NOGALAMYCIN INTERCALATION -------------------------------------------------------------------------------------- Page 6 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DDF074 5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3', INTERCALATION ACRIDINE DERIVATIVE DDF077 5'-D(*TP*GP*(CH2-DM8)GP*CP*CP*G)-3', 2'- INTERCALATION BROMO-4'-EPIDAUNORUBICIN DDF078 5'-D(*CP*GP*AP*TP*CP*G)-3', N-(2- INTERCALATION HYDROXYETHYL)DOXORUBICIN DDF079 5'-D(*CP*GP*TP*AP*CP*G)-3', N,N-BIS(3- INTERCALATION AMINOPROPYL)-2-ANTHRAQUINONESULFONAMIDE DDFA14 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)- INTERCALATION 3', NOGALAMYCIN DDFA15 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)- INTERCALATION 3', U-58872 DDFA16 5'-D(*(CH3)CP*GP*TP(S)*AP*(CH3)CP*G)- INTERCALATION 3', NOGALAMYCIN DDFB24 5'-D(*CP*GP*TP*(NH2,CH2- INTERCALATION, COVALENT DAUNOMYCIN)AP*CP*G)-3' DDFB25 5'-D(*CP*GP*TP*(NH2)AP*CP*G)-3', MAR70 INTERCALATION, COVALENT AND HCHO DDFB58 5'-D(*CP*GP*CP*GP*CP*G)-3', MAR70 INTERCALATION COBALT(II)CHLORIDE SOAKED DDFB70 5'-D(*CP*GP*(GLU)TP*AP*CP*G)-3', INTERCALATION DAUNOMYCIN DDFB76 5'-D(*CP*GP*(CH2-DM8)GP*(BR)CP*CP*G)-3' INTERCALATION -------------------------------------------------------------------------------------- Page 7 created by the NDB Project on Wed May 26 14:33:08 2004 DNA INTERCALATION COMPLEXES -------------------------------------------------------------------------------------- NDB ID Descriptor/Drug Name Binding Type -------------------------------------------------------------------------------------- DDFP13 5'-D(*CP*GP*TP(S)*AP*CP*G)-3', INTERCALATION NOGALAMYCIN DDFP21 5'-D(*CP*GP*TP(S)*AP*CP*G)-3', 11- INTERCALATION DEOXYDAUNOMYCIN DDFS42 5'-D(*CP*GP*)-ARA(*CP*)-D(*GP*CP*G)-3', INTERCALATION, COVALENT DAUNOMYCIN AND HCHO DDFS43 5'-D(*CP*AP*)-ARA(*CP*)-D(*GP*TP*G)-3', INTERCALATION, COVALENT ADRIAMYCIN AND HCHO DDH010 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3', BIS-INTERCALATION TRIOSTIN A DDH037 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', INTERCALATION, GROOVE BINDER ACTINOMYCIN D, RE-REFINEMENT DDH048 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', INTERCALATION, GROOVE BINDER ACTINOMYCIN D DDH051 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', N8- INTERCALATION, GROOVE BINDER ACTINOMYCIN D DDH071 5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3', F8- INTERCALATION, GROOVE BINDER ACTINOMYCIN D -------------------------------------------------------------------------------------- Page 8 created by the NDB Project on Wed May 26 14:33:08 2004