STRUCTURE SUMMARY FOR PROTEIN/RNA COMPLEXES (ENZYMES) ----------------------------------------------------------------------------------------------------------------------------- NDB ID Descriptor Type NA Description Special NA Features Base Mod. Phosph.Mod. Mispair ----------------------------------------------------------------------------------------------------------------------------- 1T4L Ribonuclease III/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N Y PR0005 U1A SPLICEOSOMAL PROTEIN/HEPATITIS U SINGLE STRAND LOOPS, FLIPPED-OUT N N Y DELTA VIRUS GENOMIC RIBOZYME BASES COMPLEX PR0006 THREONYL-TRNA SYNTHETASE/TRNA(THR) T SINGLE STRAND n.a. N N Y COMPLEX (EC 6.1.1.3) PR0012 ENDORIBONUCLEASE T1/DINUCLEOTIDE n.a. n.a. n.a. N Y N COMPLEX PR0013 ISOLEUCYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.5)/TRNA COMPLEX PR0014 ISOLEUCYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.5)/TRNA COMPLEX PR0019 ASPARTYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.12)/TRNA COMPLEX, ADENOSINE MONOPHOSPHATE, ASPARTYL- 2'-DEOXY-ADENOSINE-5'-MONOPHOSPHATE PR0023 ASPARTYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.12)/ASPARTYL-TRNA COMPLEX PR0024 PHENYLALANYL-TRNA SYNTHETASE T SINGLE STRAND HAIRPIN LOOP, N N Y CHAINS A AND B FLIPPED-OUT BASES (E.C.6.1.1.20)/TRNA(PHE) COMPLEX PR0025 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.18)/GLUTAMINYL TRNA COMPLEX PR0026 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.18)/GLUTAMINYL TRNA COMPLEX PR0027 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.18)/GLUTAMINYL TRNA COMPLEX PR0029 VALYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.9)/RNA COMPLEX PR0030 ARGINYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.19)/TRNA(ARG) COMPLEX PR0031 ARGINYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.19)/TRNA(ARG) COMPLEX PR0032 ISOLEUCYL-TRNA SYNTHETASE T SINGLE STRAND n.a. N N Y (E.C.6.1.1.5)/TRNA COMPLEX PR0035 GLUTAMYL-TRNA SYNTHETASE (E.C. T SINGLE STRAND n.a. N N Y 6.1.1.17)/GLUTAMYL TRNA COMPLEX PR0049 ASPARTYL-TRNA SYNTHETASE (E.C. T SINGLE STRAND n.a. N N N 6.1.1.12)/ASPARTYL T-RNA Complex PR0051 RESTRICTOCIN/31-MER SRD RNA Complex U SINGLE STRAND FLIPPED-OUT BASES N N N PR0052 RESTRICTOCIN/29-MER SRD RNA Complex U SINGLE STRAND FLIPPED-OUT BASES N N N ----------------------------------------------------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:33:30 2004 STRUCTURE SUMMARY FOR PROTEIN/RNA COMPLEXES (ENZYMES) ----------------------------------------------------------------------------------------------------------------------------- NDB ID Descriptor Type NA Description Special NA Features Base Mod. Phosph.Mod. Mispair ----------------------------------------------------------------------------------------------------------------------------- PR0053 RESTRICTOCIN/29-MER SRD RNA Complex U SINGLE STRAND FLIPPED-OUT BASES N N N PR0056 PROLYL-TRNA SYNTHETASE (E.C. T SINGLE STRAND n.a. N N N 6.1.1.15)/TRNA Complex PR0057 PROLYL-TRNA SYNTHETASE (E.C. T SINGLE STRAND n.a. N N N 6.1.1.15) /TRNA Complex PR0059 FMET FORMYLTRANSFERASE (E.C. T SINGLE STRAND n.a. N N Y 2.1.2.9) /METHIONYL-TRNA Complex PR0060 TRNA PSEUDOURIDINE SYNTHASE B U SINGLE STRAND LOOP, FLIPPED-OUT N N N (E.C. 4.2.1.70)/RNA Complex BASES PR0064 Threonyl-tRNA synthetase U SINGLE STRAND LOOP, FLIPPED-OUT N N Y (E.C.6.1.1.3)/RNA Complex BASE PR0069 Valyl-tRNA synthetase T SINGLE STRAND n.a. N N Y (E.C.6.1.1.9)/TRNA (VAL) Complex PR0086 Minor core protein lambda 3 U SINGLE STRAND n.a. N N N PR0087 Minor core protein lambda 3 U SINGLE STRAND n.a. N N N PR0088 Minor core protein lambda 3 U SINGLE STRAND n.a. N N N PR0089 Glutamyl-tRNA T SINGLE STRAND n.a. N N Y synthetase(E.C.6.1.1.17)/RNA PR0090 Glutamyl-tRNA T SINGLE STRAND n.a. N N Y synthetase(E.C.6.1.1.17)/RNA PR0091 RNA dependent RNA polymerase U SINGLE STRAND n.a. N N N (E.C.2.7.7.48)/RNA PR0092 Tyrosyl-tRNA T SINGLE STRAND n.a. N Y Y synthetase(E.C.6.1.1.1)/RNA PR0093 Archaeosine tRNA-guanine T SINGLE STRAND BULGES, OVERHANGING N N Y transglycosylase(E.C.2.4.2.29)/tRNA BASE, LOOP (Val) PR0095 Glutaminyl-tRNA synthetase T SINGLE STRAND n.a. N N Y (E.C.6.1.1.18)/Glutaminyl tRNA complex PR0096 Glutaminyl-tRNA synthetase T SINGLE STRAND n.a. N N Y (E.C.6.1.1.18)/Glutaminyl tRNA complex PR0101 Queuine tRNA-ribosyltransferase U SINGLE STRAND LOOP, HAIRPIN LOOP, N N Y (E.C.2.4.2.29)/RNA complex BULGES, FLIPPED-OUT BASES PR0102 Queuine tRNA-ribosyltransferase U SINGLE STRAND LOOP, HAIRPIN LOOP, N N Y (E.C.2.4.2.29)/RNA complex BULGES, FLIPPED-OUT BASES PR0105 tRNA pseudouridine synthase B RH DOUBLE HELIX LOOPS, HAIRPIN N N N (E.C. 4.2.1.70)/RNA Complex LOOP, BULGES, FLIPPED-OUT BASES, ----------------------------------------------------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:33:30 2004 STRUCTURE SUMMARY FOR PROTEIN/RNA COMPLEXES (ENZYMES) ----------------------------------------------------------------------------------------------------------------------------- NDB ID Descriptor Type NA Description Special NA Features Base Mod. Phosph.Mod. Mispair ----------------------------------------------------------------------------------------------------------------------------- PRV007 VP39 PROTEIN (E.C.2.7.7.19) n.a. SINGLE STRAND n.a. N N N MUTANT/RNA COMPLEX, S-ADENOSYL-L- HOMOCYSTEINE PRV022 HIV-1 REVERSE TRANSCRIPTASE/RNA U SINGLE STRAND LOOPS, FLIPPED-OUT N N Y PSEUDOKNOT COMPLEX BASES, OVERHANGING BASES PTE001 THERMUS THERMOPHILUS PROLYL-TRNA A DOUBLE HELIX SEVERE DISTORTION N N N SYNTHETASE/DNA COMPLEX OF THE ANTICODON LOOP PTE002 THERMUS THERMOPHILUS PROLYL-TRNA A DOUBLE HELIX SEVERE DISTORTION N N N SYNTHETASE/DNA COMPLEX OF THE ANTICODON LOOP PTE003 GLUTAMINYL-TRNA SYNTHETASE/TRNA T n.a. n.a. N N Y COMPLEX PTR001 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N N (E.C.6.1.1.18)/RNA Complex PTR002 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N Y (E.C.6.1.1.18)/RNA COMPLEX + ADENOSINE MONOPHOSPHATE PTR003 GLUTAMINYL-TRNA T SINGLE STRAND LOOP N N Y SYNTHETASE(E.C.6.1.1.18)/RNA Complex + ADENOSINE-5'-TRIPHOSPHATE PTR004 SERYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N Y (E.C.6.1.1.11)/RNA COMPLEX PTR005 ASPARTYL-TRNA T SINGLE STRAND LOOP N N Y SYNTHETASE(E.C.6.1.1.12)/RNA Complex PTR007 SERYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N N (E.C.6.1.1.11) PTR008 ASPARTYL-TRNA SYNTHETASE (E.C. T SINGLE STRAND LOOP N N Y 6.1.1.12)/RNA Complex, ADENOSINE- 5'-TRIPHOSPHATE PTR009 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N Y (E.C.6.1.1.18) MUTANT/RNA COMPLEX + ADENOSINE-5'-TRIPHOSPHATE PTR010 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N Y (E.C.6.1.1.18) MUTANT/RNA COMPLEX + ADENOSINE-5'-TRIPHOSPHATE PTR011 GLUTAMINYL-TRNA SYNTHETASE T SINGLE STRAND LOOP N N Y (E.C.6.1.1.18) MUTANT/RNA COMPLEX + ADENOSINE-5'-TRIPHOSPHATE PTR014 LYSYL-TRNA SYNTHETASE/RNA (E.COLI T SINGLE STRAND LOOP N N N TRNA(LYS)) COMPLEX PTR015 LYSYL-TRNA SYNTHETASE/RNA T SINGLE STRAND LOOP N N N (T.THERMOPHILUS TRNA(LYS)) COMPLEX ----------------------------------------------------------------------------------------------------------------------------- Page 3 created by the NDB Project on Wed May 26 14:33:30 2004