STRUCTURE SUMMARY FOR PROTEIN/RNA COMPLEXES (STRUCTURAL) ----------------------------------------------------------------------------------------------------------------------------- NDB ID Descriptor Type NA Description Special NA Features Base Mod. Phosph.Mod. Mispair ----------------------------------------------------------------------------------------------------------------------------- PR0001 MS2 PROTEIN CAPSID/RNA COMPLEX U SINGLE STRAND LOOPS,OVERHANGING N N N BASES PR0002 MS2 PROTEIN CAPSID/RNA COMPLEX U SINGLE STRAND LOOPS, OVERHANGING N N N BASES PR0003 MS2 PROTEIN CAPSID/RNA COMPLEX U SINGLE STRAND LOOP, FLIPPED-OUT N N N BASES PR0017 DESMODIUM YELLOW MOTTLE VIRUS/RNA U SINGLE STRAND n.a. N N N COMPLEX PR0020 DOUBLE STRANDED RNA BINDING A DOUBLE HELIX n.a. N N N PROTEIN A/RNA COMPLEX PR0021 SIGNAL RECOGNITION PARTICLE U SINGLE STRAND LOOP, FLIPPED-OUT N N Y PROTEIN (FIFTY-FOUR HOMOLOG)/RNA BASES, BASE INTERCALATED PR0028 CAPSID PROTEIN MS2/RNA COMPLEX U SINGLE STRAND n.a. N N N PR0036 PARIACOTO VIRUS/RNA COMPLEX A SINGLE STRAND n.a. N N N PR0037 SIGNAL RECOGNITION PROTEIN/RNA U SINGLE STRAND LOOP, FLIPPED-OUT N N Y COMPLEX BASE PR0039 MS2 COAT PROTEIN/RNA Complex U SINGLE STRAND HAIRPIN LOOP Y N N PR0040 MS2 COAT PROTEIN/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N N PR0041 SIGNAL RECOGNITION PARTICLE 9 KDA U SINGLE STRAND FLIPPED-OUT BASE N N Y AND 14KDA PROTEINS/RNA Complex PR0042 SIGNAL RECOGNITION PARTICLE 9 KDA U SINGLE STRAND n.a. N N N PROTEIN, SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN/RNA Complex PR0043 MS2 COAT PROTEIN/RNA COMPLEX U SINGLE STRAND HAIRPIN LOOP N N N PR0044 MS2 COAT PROTEIN/RNA COMPLEX U SINGLE STRAND HAIRPIN LOOP N N N PR0045 MS2 COAT PROTEIN/RNA COMPLEX U SINGLE STRAND HAIRPIN LOOP N N N PR0050 BACTERIOPHAGE MS2/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N N PR0054 SIGNAL RECOGNITION PARTICLE 19 KDA U SINGLE STRAND LOOP Y N N PROTEIN/RNA Complex PR0061 COAT PROTEIN MS2/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N N PR0062 COAT PROTEIN MS2/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N N ----------------------------------------------------------------------------------------------------------------------------- Page 1 created by the NDB Project on Wed May 26 14:33:33 2004 STRUCTURE SUMMARY FOR PROTEIN/RNA COMPLEXES (STRUCTURAL) ----------------------------------------------------------------------------------------------------------------------------- NDB ID Descriptor Type NA Description Special NA Features Base Mod. Phosph.Mod. Mispair ----------------------------------------------------------------------------------------------------------------------------- PR0066 COAT PROTEIN MS2/RNA Complex U SINGLE STRAND HAIRPIN LOOP N N N PR0067 SIGNAL RECOGNITION PARTICLE 19 kDa U SINGLE STRAND LOOP N N Y protein/RNA PR0068 capsid protein/RNA complex U SINGLE STRAND n.a. N N N PR0073 Signal recognition particle 19 kDa U SINGLE STRAND LOOPS N N Y protein/RNA Complex PR0078 PUTATIVE SNRNP SM-LIKE PROTEIN/RNA U SINGLE STRAND n.a. N N Y Complex PR0082 SIGNAL RECOGNITION PARTICLE 19 KDA U SINGLE STRAND n.a. N N Y AND 54 KDA PROTEINS/RNA Complex PR0098 SSRA-BINDING PROTEIN/RNA Complex U SINGLE STRAND LOOPS, INTERNAL N N Y LOOP, BULGES, FLIPPED-OUT BASES PR0104 Signal recognition 54 kDa U SINGLE STRAND LOOP, FLIPPED-OUT N N Y PROTEIN/RNA Complex BASES PRV001 ICOSAHEDRAL VIRUS/RNA COMPLEX U SINGLE STRAND n.a. N N N PRV002 U1A MUTANT/RNA COMPLEX + GLYCEROL U SINGLE STRAND OVERHANGING BASE, N N N HAIRPIN LOOP PRV003 MS2 COAT PROTEIN/RNA COMPLEX U SINGLE STRAND HAIRPIN LOOP, BULGE N N N PRV004 BLACK BEETLE VIRUS CAPSID U DOUBLE HELIX n.a. N N N PROTEIN/RNA COMPLEX PRV005 COWPEA CHLOROTIC MOTTLE VIRUS/RNA U SINGLE STRAND n.a. N N N COMPLEX PRV006 RNA BACTERIOPHAGE MS2 COAT U SINGLE STRAND HAIRPIN LOOP, BULGE N N N PROTEIN/RNA COMPLEX PRV008 BACTERIOPHAGE MS2 CAPSID U SINGLE STRAND HAIRPIN LOOP N N N PROTEIN/RNA COMPLEX PRV009 BACTERIOPHAGE MS2 COAT PROTEIN U SINGLE STRAND HAIRPIN LOOP N N N MUTANT/RNA COMPLEX PRV010 MS2 COAT PROTEIN/RNA COMPLEX A DOUBLE HELIX LOOP N N N PRV020 SATELLITE TOBACCO MOSAIC VIRUS/RNA A DOUBLE HELIX OVERHANGING BASE N N N COMPLEX AND A FREE NUCLEOTIDE PRV021 MS2 PROTEIN CAPSIDS/RNA COMPLEX U n.a. RNA LOOP N N N ----------------------------------------------------------------------------------------------------------------------------- Page 2 created by the NDB Project on Wed May 26 14:33:33 2004